Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03085 ATGGCTTCATTTCCTTCAAATTCTGCATTGGAACATAGCATGGCCAGTGCACAACAAAACAGTAACCCTCATGCTTCCTCACCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACTTTCTTGAGAAGAGTATTCCATTACCAAAACGGACCAAGATCCAATCTCGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAGTTGATTGCTTTGTTGGTCCAAATAGCAAGCACAACATTCACTTTGGCCATTTCGAAGAGTGAGAAGCCAATTTGGCCTATGAGAGTGTGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTTCTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAAGGGAATAATGCTCTTAGCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGACTTCACATTTGATAGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGATCCTTCCCACAAGCCCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTATTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGGTCCTCTGCTAGAGGGGCATCTGATGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGCTTCATTCCAACTTGGACATTGCCAATGACTCTCAAAGCAGTGAAAGATTGATCAACCAAGATCCAGAATGTTGCATTTGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCCTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG 990 0.4273 MASFPSNSALEHSMASAQQNSNPHASSPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQIASTTFTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQLHVTQGNNALSLSELEQQRNNEESSVYRTSHLIDKCRSSLELFFAIWFVMGNVWAFDSRFGSFPQAPKLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISQLPSWRYKGLHSNLDIANDSQSSERLINQDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03085 329 CDD RING-H2_RNF111_like 281 324 - -
Gma08g03085 329 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Gma08g03085 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 328 IPR013083 -
Gma08g03085 329 SUPERFAMILY RING/U-box 274 327 - -
Gma08g03085 329 SMART ring_2 283 323 IPR001841 -
Gma08g03085 329 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 328 - -
Gma08g03085 329 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 9 328 - -
Gma08g03085 329 Pfam RING-like zinc finger 282 310 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03085 Gma-Chr8 47549701 47552469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03085 14 327 C3H Transcription Factor Family AT4G26580 65.517 2.37e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03085 - - gmx:100818715 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03085 08 47549701 47552469 Gma08g03085 08 47549701 47552469 ECH