Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03049 ATGGCGGTTTCTTCTCTCTCTGTTACTCCTCTTTCGCTCTCAAATTCTTCCCCCTCTCTATCTTCCAAGCCAAAGTTTCCATCTTTGTGTTTTCTCTCTGGCAACAACACCACATTGAGGGTAACATGCCCAAAACCTCTGCACTCATCCACTGTTGTTCATGTTGCTACCGAAGCGTTGGATTCATCCCCTGATCCCTTGGACCCACCTCCAGAAACCCTTGATGATGACTCTGACGCCACCACCTTTGAGGTTGGTGACTTGGGGACTCCTAGCACTTCAGCAATTAGCATTGGTGGCGATGCAGATACAATGGCACCAAAGCAGAAGATTAGAATCAAGCTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTAGATGCTGCAAGGACTACCAACGCGAAAACAATGGGACCCGTGCCATTACCAACCAAGAAGCGAATCTACTGTGTTCTTAAATCCCCGCACGTACATAAGGATGCCCGGTTCCATTTCGAGATCAGAACTCACCAGCGTCTCATTGATATTCTATATCCTACAGCTCAAACAATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTGTAG 624 0.4712 MAVSSLSVTPLSLSNSSPSLSSKPKFPSLCFLSGNNTTLRVTCPKPLHSSTVVHVATEALDSSPDPLDPPPETLDDDSDATTFEVGDLGTPSTSAISIGGDADTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03049 207 ProSitePatterns Ribosomal protein S10 signature. 134 149 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 Hamap 30S ribosomal protein S10 [rpsJ]. 108 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 MobiDBLite consensus disorder prediction 60 86 - -
Gma08g03049 207 Pfam Ribosomal protein S10p/S20e 112 206 IPR027486 -
Gma08g03049 207 Gene3D Ribosomal protein S10 domain 100 207 IPR036838 -
Gma08g03049 207 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 SMART Ribosomal_S10_2 112 206 IPR027486 -
Gma08g03049 207 SUPERFAMILY Ribosomal protein S10 110 207 IPR036838 -
Gma08g03049 207 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g03049 207 PRINTS Ribosomal protein S10 family signature 110 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 PRINTS Ribosomal protein S10 family signature 145 160 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 PRINTS Ribosomal protein S10 family signature 166 180 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma08g03049 207 PANTHER BNAC05G40270D PROTEIN 1 207 - -
Gma08g03049 207 TIGRFAM rpsJ_bact: ribosomal protein uS10 109 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03049 Gma-Chr8 47131053 47135447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03049 109 205 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.633 3.19e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03049 K02946 - gmx:100306286 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03049 08 47131053 47135447 Gma08g03049 08 47131053 47135447 ECH
Gma18g00727 18 7706924 7710795 Gma08g03049 08 47131053 47135447 GST