Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03042 ATGTCGTTTGTCTTATCACTCTACTCTCTAGGACACTTTGGCAGCAGTTTTGTGACATTTTTGGTGAAGCCGGTTTTCGTGCATGGCTTATCTGGTGTTCTTCATCTACTGTTGTTATTGGCGCTTTTAGTGTCATTACTGTGGAAGAAAGTCACTGTAGGAGCCAGAGAACGCTCCAAAGAGAACAATAATAACACCTTGTTTGCAAGGATTCCTCTTTGTTCTTTCGTTGTTTCTGCTATAAATCTTCTACTCTTTTTGTTTGATTACTTTTGTTGGTATAAAAATGGTTGGTCACTAGGAAAGTTTCTGACCCTTCTGGATTTGGTGCTCAAAACGGTTGCTTGGGGGGTTGGTGGTGCTTTTTTGCATGGGGAACTCTTCATTTCAAGGGAAAGAAGATTGCCATTCTTCTTCAGAGCTTGGTGCGTCCTTTACCTCTTTGTTTCCGGTTATTGCTTTATAGTGAACATTGTTCTCTATGAAAAGCATGCTGCTTTGCCTATTCAGTGCTTAGTTTCTGATGTTTCCTCTGTTTGTGTGGGTTTATTCTTCTGTTACTTGGGTTTTTTTGTAAAGTTTGAGGCTGGAGTGAGAAATAGTACTCTTCAAGAATCTCTTTTGAATGGTGATTCAAATGATAATGATGTGTTTGGGATTAATGAGACCAAGGGGGGTGACACTGATACCCCTTACTCTAATGCTGGAATTTTTGGCATTCTTACCTTCTCTTGGGTTGGTCCTCTGATTACTCTTGGAAAGAAGAAGACTTTGGACCTTGAGGATGTTCCCCAACTCGACAAAAGAGACAGTTTAGTTGGAGCATTTCCAACTTTTAGGGATAAGCTTAAGGCATGTTGTGGAGCAAGTAACACAGTGACCACACTTGAGTTAGTGAAGTCATTAGTATTCTCAACCTGGACAGAGATTATTGTCACAGCTATCCTTGCATTGGTGAACACATTGGCGACTTTTGTCGGTCCCTATCTCATTGATGGTTTTGTTCAATACCTTAATGGAAAACGACAATTTGAAAAAGAGGGCCTTGTTTTGGTGTCTGCATTTTGTGTGGCAAAGCTTGTGGAGTGCCTGACAAAGAGGCACTGGTTCTTTAGGTTGCAGCAGGTTGGAATACGAATGCGAGCACTGCTTGTGACAATCATATATAACAAAGCTTTGAACCTTTCATGTCAATCAAAGCAAGGACAGACCACAGGGGAAATAATCAACTTCATGAGTGTGGATGCAGAAAGAGTTGGTGAATTCAGTTGTCACCTACACGATCTGTGGTTAGTAGTCCTACAGGTTTTAGTAGGCTTGCTGGTTTTGTATAAAAATCTTGGGCTTGCTACAATTGCTGGATTTGTTGCAATTCTCATTGTAATGTGGGCAAACATTCCCTTGGGTTCAACCCAAGAGAAGTTTCACAACAAGTTGATGGAGTCAAAAGATGAGAGAATGAAAGCAACATCTGAGATTTTAAGGAACATGAGGATTCTCAAACTGCAAGGATGGGAAATGAAGTTTTTGTCTAAGATAACTAAACTCAGAAAGATTGAGCAAGGCTGGTTAAAAAAAGTTATATACACTTTAGCCATCATCATATTTTTATTTTGGTGTGCCCCAGCGATTGTGTCTGTGGTTACTTTTGGTACTTGTATGCTGATAGGGATTCCTCTTGAAGCAGGGAAGATCTTGTCTACACTTGCAACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATTTCAATGATGGCACAAACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTCGATGAGATGCTATCTGATGTTGTGAAGAAGCTTCCGCCGGGTAGTTCTGATATAGCAATTGAAGTGGTTGATGGGAATTTCTCTTGGGATTCATTTTCCCCTAATATAACATTGCAAAACATAAATCTAAGAGTTTTTCATGGCATGAGGGTTGCAGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTATATTGGGAGAAGTACCAAAGAAATCAGGGATCCTAAAGGTGTGTGGAACAAAGGCCTATGTAGCTCAGTCACCATGGATACAAAGTAGCACCATAGAGGATAATATATTGTTTGGCAAGGATATGGAAAGGGAAAGGTATGAGAAGGTCCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATATTTTATCATTTGGAGATCAGACTATTATAGGAGAGAGGGGGATAAATTTGAGTGGTGGACAGAAGCAAAGAATACAAATTGCTCGTGCTCTATACCATGATGCTGATATATATCTATTTGATGATGTGTTTAGTGCTGTGGATGCTCATACAGGATCTCATCTTTTTAAGGAATGCTCACTAGGCTTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCACCAAGTAGAGTTCTTACCTGCGGCTGACCTTATCTTGGTCATGAAAGATGGGAATATTACTCAATGTGGAAAATATAATGATCTGCTCATCTCGGGCACTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTTTGCACTTGATTCATTAGATGGAGGGACAGTATCTGCTAAAATAAGTGTCTCTCTTTCTCATGCTGTTGAAGAAAAAGAAGTAAAGAAAGATGTGCAAAATGGTGGAGAAGATGACAAATCACATCTAAAAGGTCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAGGTTGGGTTTTCAGTTTATTGGAAATATATAATAGCAGCATATGGAGGAGCACTTGTACCACTCATATTGTTGGCTGAAATTTTGTTCCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTTGGTAACTCCTATCTCAACTGATGTTGAGCCTTCTGTTGGAGGAAGCATGCTTATAGTTGTCTATGTAGCTTTGGCCATAGGAAGTTCTGTTTGTGTCCTTGCTAGAGCAACACTTGTTGCCACAGCTGGTTATAAGACAGCTACTCTACTCTTCAACAACATGCATTTCTGCATTTTTCGCGCTCCAATGTCATTTTTTGATGCCACTCCAAGTGGAAGAATCCTTAATAGGGCTTCGACTGACCAAAGTGCAGTGGATATAGACATTCCTTTTCAAGCTGGATCACTTGCTTCTTCTGTGGTACATCTTCTTGGAATTATAGTGGTGATGTCTCAAGTAGCATGGCAGGTTTTCATTGTCTTCGTTCCTATCACAGCAATTAGCATTTGGTATCAGCAATATTATTTACCATCGGCTCGGGAGCTATCCCGTTTAGTTGGGGTATGCAAAGCTCCTGTCATCCAACACTTTGCTGAAACAATATCAGGTGCATCAATCATCAGGAGCTTTGATCAAGTACCAAGATTTCAGCAAACAATTATGAAACTAATGGATGGATATTCTCGCCCCAAGTTCAACAATGCTGGTGCTATGGAATGGTTGTGCTTCCGATTAGATATGTTGTCTTCTATCACATTTTCCTTTTGTTTGATATTCTTGATATCTATTCCACAGGGATTCATAGATTCAGGTGTTGCTGGTTTAGCTGTAATCTATGGCCTTAATCTGAACATTGTACAATCATGGATGATATGGGAACTTTGCAACATAGAGACCAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTCCATTCCTAGTGAGCCTCCTCTTGTTGTAGAGGAAAACCGACCACATGATTCTTGGCCATCATGTGGCAGAATTGATATCCACAACTTGCAGGTACGTTATGCTCCACATATGCCATTTGTGTTGCACAGCCTTGCATGCACATTTCATGGAGGACTGAAAACTGGAATTGTCGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGAATCGTTGAGCCTACTGTTGGGAGAATTATGATTGATGGTGTCAACATCTCTTCCATTGGACTGCGTGATTTGAGGTCTAGACTGAGCATTATTCCTCAGGATCCAACTATGTTTGAAGGCACAGTGAGAAGTAATCTAGACCCATTGGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTTGATAAGTGTCAACTTGGAGATGAAGTTAGAAGGAAAGAAGGAAAACTAGAGTCTGCAGtttgtgagaatggagagaATTGGAGTATGGGGCAAAGGCAATTGGTCTGTCTTGGTAGGGTGTTGCTTAAGAAGAGTAAGGTCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTAAGGCAACATTTCTTTAATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTCATTGATAGTGATATGGTTCTACTACTTAATCAAGGACTTATTGAGGAGTATGATTCCCCAACAAGGTTGCTAGAAGACAAGTTATCTTCTTTTGCTCAACTTGTTGCAGAGTATACGACAAGGTCCAATTCCAGTTTTGACCAACTAAAATAA 4491 0.3979 MSFVLSLYSLGHFGSSFVTFLVKPVFVHGLSGVLHLLLLLALLVSLLWKKVTVGARERSKENNNNTLFARIPLCSFVVSAINLLLFLFDYFCWYKNGWSLGKFLTLLDLVLKTVAWGVGGAFLHGELFISRERRLPFFFRAWCVLYLFVSGYCFIVNIVLYEKHAALPIQCLVSDVSSVCVGLFFCYLGFFVKFEAGVRNSTLQESLLNGDSNDNDVFGINETKGGDTDTPYSNAGIFGILTFSWVGPLITLGKKKTLDLEDVPQLDKRDSLVGAFPTFRDKLKACCGASNTVTTLELVKSLVFSTWTEIIVTAILALVNTLATFVGPYLIDGFVQYLNGKRQFEKEGLVLVSAFCVAKLVECLTKRHWFFRLQQVGIRMRALLVTIIYNKALNLSCQSKQGQTTGEIINFMSVDAERVGEFSCHLHDLWLVVLQVLVGLLVLYKNLGLATIAGFVAILIVMWANIPLGSTQEKFHNKLMESKDERMKATSEILRNMRILKLQGWEMKFLSKITKLRKIEQGWLKKVIYTLAIIIFLFWCAPAIVSVVTFGTCMLIGIPLEAGKILSTLATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEMLSDVVKKLPPGSSDIAIEVVDGNFSWDSFSPNITLQNINLRVFHGMRVAVCGTVGSGKSTLLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSSTIEDNILFGKDMERERYEKVLEACCLKKDLDILSFGDQTIIGERGINLSGGQKQRIQIARALYHDADIYLFDDVFSAVDAHTGSHLFKECSLGFLSSKTVVYVTHQVEFLPAADLILVMKDGNITQCGKYNDLLISGTDFMELVGAHKEALFALDSLDGGTVSAKISVSLSHAVEEKEVKKDVQNGGEDDKSHLKGQLVQEEEREKGKVGFSVYWKYIIAAYGGALVPLILLAEILFQLLQIGSNYWMALVTPISTDVEPSVGGSMLIVVYVALAIGSSVCVLARATLVATAGYKTATLLFNNMHFCIFRAPMSFFDATPSGRILNRASTDQSAVDIDIPFQAGSLASSVVHLLGIIVVMSQVAWQVFIVFVPITAISIWYQQYYLPSARELSRLVGVCKAPVIQHFAETISGASIIRSFDQVPRFQQTIMKLMDGYSRPKFNNAGAMEWLCFRLDMLSSITFSFCLIFLISIPQGFIDSGVAGLAVIYGLNLNIVQSWMIWELCNIETKIISVERILQYTSIPSEPPLVVEENRPHDSWPSCGRIDIHNLQVRYAPHMPFVLHSLACTFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPTVGRIMIDGVNISSIGLRDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLESAVCENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFFNCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLEDKLSSFAQLVAEYTTRSNSSFDQLK 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03042 1496 CDD ABC_6TM_ABCC_D2 929 1223 IPR044726 GO:0140359
Gma08g03042 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma08g03042 1496 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 85 1496 - -
Gma08g03042 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 85 1496 - -
Gma08g03042 1496 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma08g03042 1496 Pfam ABC transporter transmembrane region 931 1173 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma08g03042 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Gma08g03042 1496 SUPERFAMILY ABC transporter transmembrane region 303 606 IPR036640 GO:0005524|GO:0016021
Gma08g03042 1496 Pfam ABC transporter 1266 1413 IPR003439 GO:0005524
Gma08g03042 1496 Pfam ABC transporter 643 776 IPR003439 GO:0005524
Gma08g03042 1496 Gene3D - 608 855 IPR027417 -
Gma08g03042 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma08g03042 1496 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Gma08g03042 1496 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Gma08g03042 1496 Gene3D ABC transporter type 1, transmembrane domain 289 607 IPR036640 GO:0005524|GO:0016021
Gma08g03042 1496 Gene3D ABC transporter type 1, transmembrane domain 892 1229 IPR036640 GO:0005524|GO:0016021
Gma08g03042 1496 SMART AAA_5 652 825 IPR003593 -
Gma08g03042 1496 SMART AAA_5 1274 1459 IPR003593 -
Gma08g03042 1496 CDD ABCC_MRP_domain1 625 824 - -
Gma08g03042 1496 CDD ABCC_MRP_domain2 1246 1466 - -
Gma08g03042 1496 MobiDBLite consensus disorder prediction 881 901 - -
Gma08g03042 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 848 IPR003439 GO:0005524
Gma08g03042 1496 Gene3D - 1231 1484 IPR027417 -
Gma08g03042 1496 SUPERFAMILY ABC transporter transmembrane region 929 1230 IPR036640 GO:0005524|GO:0016021
Gma08g03042 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1250 1482 IPR003439 GO:0005524
Gma08g03042 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03042 Gma-Chr8 47036257 47042567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03042 625 871 Calmodulin-binding Proteins AT2G36910 29.963 2.28e-24 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03042 08 47036257 47042567 Gma08g03042 08 47036257 47042567 ECH