Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma08g03039 | ATGGATATTTCGGAGTACACAAGGATTGTTTTTGACAAACTTCATAGATTTGAGCCTGAGAATGCTACAAAGATCATCGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTGCCAGACCATTTAATTCGCGACGTGGCGTACAAGGCGAGAACCGAGCTTCAAAGGTTGGCTTCTAGATCAGCCATTCAGCCAATTTCACTTCCCACCAACTCTCAACAATGTTTAAGCCATTTGTCAGTAATCTCCCCTACTTCGGTAATCACCCCTGGCACTCTTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCCTATTGGGATCCTCAGTCTGCTAGCAATACTAATGCAGAATTCATGGCACTAGGTTATGTGGATTCTATCTCAGAACTTCAAAAGCAGACACCTTTGTTCAGTTTAGAGAATCATATGGATACTATGAACTCCGGAACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTAGTAATTTGGGTGGAAAAAATGGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATAGCTGTAGATATTATCACGAACAAGGCGCCCCAGATATGTTCTCTCACATGTATGGAAATGATATTTTTAATGATGATCAGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAACTTAAAAAAGGAGGTTCCATATCAATTGCTTCCCTTCCAATGGCATACTATGACAGGTACAAAAAAGTGCTGCAGGCAGACGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGCTAAATACATTAGCGCATCGCGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGGTGATGTTTCAAACTACTTTAGTACTTTTGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTAACATTTGATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCCCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGGAAGAACTCTGATAGGATCGAGCATTCTGCTTATTATTCACCACACTATGTAGACATTGACACTGAACCTACCTCAATTCCAAGAAGTTGTAGGAAACCTCGATTTCTGAGGAGGCAGCTCATTAACCAGCAAGAGGAGGCAGCACTTGAATTTCAGAGACAACGTTTTGCAGAGCTGCAACTGGCCCAAAAATCATTGTCCACTTCACCCCATTTAGGCTTCAACATGGACGGGTTAAAAGTTTCGGATGAACATTTCAATGTCCAGTCTGCAGAACCTCACAGTCATGCTCCGAATGACATAGCTGGATATACAGATAACAATTACACTGATGAGGACAGCAATCAAGGTCTGAACCTCCCAGACAGCCCCTTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG | 1668 | 0.4221 | MDISEYTRIVFDKLHRFEPENATKIIGYLLLQDHGEQDMVKLASLPDHLIRDVAYKARTELQRLASRSAIQPISLPTNSQQCLSHLSVISPTSVITPGTLTSPASFQVQSPYWDPQSASNTNAEFMALGYVDSISELQKQTPLFSLENHMDTMNSGTAGIANDYYGLDASSASNLGGKNGRFEFPVKTCHYFNKGFCKHGNSCRYYHEQGAPDMFSHMYGNDIFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYAKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLRKNSDRIEHSAYYSPHYVDIDTEPTSIPRSCRKPRFLRRQLINQQEEAALEFQRQRFAELQLAQKSLSTSPHLGFNMDGLKVSDEHFNVQSAEPHSHAPNDIAGYTDNNYTDEDSNQGLNLPDSPFAFPVDSGISAVM | 555 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma08g03039 | 555 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 555 | - | - | |
| Gma08g03039 | 555 | CDD | RRM_AtC3H46_like | 338 | 407 | IPR034365 | - | |
| Gma08g03039 | 555 | ProSiteProfiles | OST-type HTH domain profile. | 234 | 317 | IPR025605 | - | |
| Gma08g03039 | 555 | SUPERFAMILY | RNA-binding domain, RBD | 347 | 428 | IPR035979 | GO:0003676 | |
| Gma08g03039 | 555 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 336 | 412 | IPR000504 | GO:0003723 | |
| Gma08g03039 | 555 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 348 | 395 | IPR000504 | GO:0003723 | |
| Gma08g03039 | 555 | ProSiteProfiles | Zinc finger C3H1-type profile. | 183 | 210 | IPR000571 | GO:0046872 | |
| Gma08g03039 | 555 | MobiDBLite | consensus disorder prediction | 508 | 541 | - | - | |
| Gma08g03039 | 555 | MobiDBLite | consensus disorder prediction | 519 | 539 | - | - | |
| Gma08g03039 | 555 | SUPERFAMILY | CCCH zinc finger | 185 | 208 | IPR036855 | GO:0046872 | |
| Gma08g03039 | 555 | Gene3D | - | 183 | 239 | - | - | |
| Gma08g03039 | 555 | Coils | Coil | 460 | 480 | - | - | |
| Gma08g03039 | 555 | Gene3D | - | 340 | 414 | IPR012677 | - | |
| Gma08g03039 | 555 | Pfam | OST-HTH/LOTUS domain | 234 | 313 | IPR025605 | - | |
| Gma08g03039 | 555 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 1 | 555 | - | - | |
| Gma08g03039 | 555 | SMART | rrm1_1 | 337 | 407 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma08g03039 | Gma-Chr8 | 46987166 | 46991711 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma08g03039 | - | - | gmx:100806206 | 1122.84 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma08g03039 | 08 | 46987166 | 46991711 | Gma08g03039 | 08 | 46987166 | 46991711 | ECH | |
| Gma18g00740 | 18 | 7854339 | 7857345 | Gma08g03039 | 08 | 46987166 | 46991711 | GST | |
| Gma08g03039 | 08 | 46987166 | 46991711 | Gma02g02793 | 02 | 53524026 | 53528496 | PCT | |
| Gma02g02793 | 02 | 53524026 | 53528496 | Gma08g03039 | 08 | 46987166 | 46991711 | PCT |