Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03038 ATGCAAACACCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGACTCATATTGCATACCATCAAGCGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCAGTCCAAACTTTAGAACAATATTGCACCCTTGAATCTGCTTCCACAGGCAACAGTTTCCCTAGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCTAACAATAGTCTGTTGTCAAAGCTAGAGTCAAACTCATATGTGTTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGTTCACCCGAGGATGATTCTTATTTGACGCATGACCTTGATGGCCTGACACATAAGATAAGAGAGCTGGAAACTGCTATGCTGGGACCTAATGCAGATATGCTAGATATCTATGGTACCGTAATTCCAGAACCTGATTCATTTTTGTTAGAGGCTGAGAAGTGGAAGAAAATGATGGAAATATCATGTAGAGGGGATTTAAAAGAGATGCTTTATATGTGTGCAAAAGCAATGGCTGTGAATGATATGGAGACAACTGATTGGCTGGTGTCTGAGTTGCGTAAGATGGTGTCCATTTCGGGCAATCCGATTCAGCGACTGGGAGCATACATATTGGAGTCCTTTGTTGCAAGGATCGGTGCTTCAGGAAGCACAATCTACAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCTTACATGAATGTGCTTTATGAAATTTGTCCATACTTCAAGTTTGGTTACATGTCGGCAAATGGAGCAATTGCTGAAGCTCTGAGGGAGGAAAGTGAAGTCCACATAGTTGACTTTCAGATTGGCCAGGGAACCCAGTGGGTGAGCCTGATTCAAGCTCTTGCTCGCCGCCCTGTAGGCCCCCCGAAGATCCGAATATCAGGTGTTGATGACTCCTATTCGGCCTATGCCAGGAGAGGAGGGCTTGATATTGTTGGGAAAAGGTTATCCGCACTTGCACAGTCATGTCATGTACCCTTTGAGTTCAATGCTGTAAGAGTACCTGTTACTGAGGTGCAACTTGAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCAGTGAACTTTGCCATTAGTCTGCACCATGTGCCAGATGAAAGTGTGAACAGTCACAATCATCGTGACCGATTGTTGAGATTAGCTAAGCAACTGTCTCCTAAGGTGGTGACTCTGGTTGAGCAGGAATTCAGCACCAACAATGCGCCGTTCTTGCAGCGCTTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGAATCAATCGATACTGTTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGCGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCACGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAAAGGCTGGATTTACACCTTATCCATTGAGCTCCGTTATTAATTCTTCAATCAAGGATCTTCTGCAGAGCTACCATGGACACTACACTCTAGAAGAGAGAGATGGTGCACTATTTCTTGGTTGGATGAATCAAGTTCTTGTTGCATCTTGTGCTTGGAGATGA 1638 0.4371 MQTPQNHKISYGSGGFYVEPVQNLDSYCIPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTGNSFPSQNSPPALSFSSNNSLLSKLESNSYVLRPQHSLEIASGSPEDDSYLTHDLDGLTHKIRELETAMLGPNADMLDIYGTVIPEPDSFLLEAEKWKKMMEISCRGDLKEMLYMCAKAMAVNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARIGASGSTIYKSLKCSEPTGNELLSYMNVLYEICPYFKFGYMSANGAIAEALREESEVHIVDFQIGQGTQWVSLIQALARRPVGPPKIRISGVDDSYSAYARRGGLDIVGKRLSALAQSCHVPFEFNAVRVPVTEVQLEDLELRPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKQLSPKVVTLVEQEFSTNNAPFLQRFVETMNYYLAVFESIDTVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTKAGFTPYPLSSVINSSIKDLLQSYHGHYTLEERDGALFLGWMNQVLVASCAWR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03038 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 544 IPR005202 -
Gma08g03038 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Gma08g03038 545 Pfam GRAS domain family 176 545 IPR005202 -
Gma08g03038 545 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03038 Gma-Chr8 46969657 46971294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03038 1 545 GRAS Transcription Factor Family AT1G50600 55.072 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma08g03038 GRAS 3.9e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03038 - - gmx:100805672 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03038 08 46969657 46971294 Gma08g03038 08 46969657 46971294 ECH
Gma18g00741 18 7877772 7881678 Gma08g03038 08 46969657 46971294 GST
Gma08g03038 08 46969657 46971294 Gma14g00146 14 1181430 1184966 PCT
Gma08g03038 08 46969657 46971294 Gma02g02790 02 53507681 53512092 PCT
Gma14g00146 14 1181430 1184966 Gma08g03038 08 46969657 46971294 PCT
Gma02g02790 02 53507681 53512092 Gma08g03038 08 46969657 46971294 PCT