Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03034 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTAAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGACTGTGATCATGAGGGATCGAGTAACCGGTCGCGCTCGCGGCTTTGGTTTTGTTGTCTTTGGTGATCCTTCTGTTGCTGAGAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAgttgaagcaaagaaagctgttcctagggatgatcagcaaaacattaataggcaatctggaTCTGGAAGTGGTGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGTTGGGGTCCATCCATTTCAGCTCAGGGTGGAGGGGCTGCTTCTGGCTATGCTTCTGGGAATAATGTTTATGAAGGTGCAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACTGGTGTGGCTCCATCCTCTTCATTTAATGTGTCAACTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGCAGTGGCTCGGTTTACAATGACTCTGCTTGGCGTTCTGCTGCGTCTGAGATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATTGCTGCCTAG 717 0.4282 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIETVIMRDRVTGRARGFGFVVFGDPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQNINRQSGSGSGAFGVSIGNSGTGWGPSISAQGGGAASGYASGNNVYEGADSSFGLGGGGYGRNSSTGVAPSSSFNVSTGGYEGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGIAA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03034 238 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma08g03034 238 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Gma08g03034 238 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 97 - -
Gma08g03034 238 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 97 - -
Gma08g03034 238 Gene3D - 6 88 IPR012677 -
Gma08g03034 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma08g03034 238 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 94 238 - -
Gma08g03034 238 MobiDBLite consensus disorder prediction 78 98 - -
Gma08g03034 238 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma08g03034 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gma08g03034 238 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 94 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03034 Gma-Chr8 46916056 46919106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03034 8 54 C2H2 Transcription Factor Family AT2G19380 46.809 5.03e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03034 K14411 - gmx:100805131 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g03034 08 46916056 46919106 Gma08g03034 08 46916056 46919106 ECH
Gma18g00746 18 7957812 7960969 Gma08g03034 08 46916056 46919106 GST
Gma08g03034 08 46916056 46919106 Gma14g00152 14 1221978 1228631 PCT
Gma08g03034 08 46916056 46919106 Gma02g02785 02 53462119 53464661 PCT
Gma14g00152 14 1221978 1228631 Gma08g03034 08 46916056 46919106 PCT
Gma02g02785 02 53462119 53464661 Gma08g03034 08 46916056 46919106 PCT