Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03002 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTGGAACTTCAATTGCAAGAACAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCGACCCTGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAGAAAGTGGATCCCCTTGATCCCACTTATGTTGAACCAGAGCCATTGGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCAAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGACGACGGAAGTTCTGTGAAACTTGGGGCAGAAGAAATGGCACTGTCTGAGCATGCAGAAATGAGTGACATAGAGAGTGATTCCAGCTTAGATCAATCCGATTCCAGTGACTATGAGGAGGAGGAGGAATCGCAAGGCATAGGATTTCTGGAGAGTACCAATCTACAGAGAGGTATTCAAACTGAAACTGCGACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATAGCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCATGCACTCGAGTCTCATAAAAGGGAAGAGAACAAAGAGAAGCAAGGCAAGAAGAAACAGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCAGAAGCAAACCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAATGAGGCTTTTGGCGGTGGATTGATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAGAAGGTGGATAGACGAGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATTAGGGTTGAAAAGCTCGAGCACATTGTCAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1488 0.4442 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEKVDPLDPTYVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELKSWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEMSDIESDSSLDQSDSSDYEEEEESQGIGFLESTNLQRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIAVKVLPPKQSLDHALESHKREENKEKQGKKKQSRGGKRKREKKFAEANRAAKEEEESASDVFALINNHLAMHNEAFGGGLMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKIRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03002 495 Coils Coil 455 475 - -
Gma08g03002 495 MobiDBLite consensus disorder prediction 238 272 - -
Gma08g03002 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Gma08g03002 495 Pfam CCCH-type zinc finger 145 165 IPR041367 -
Gma08g03002 495 Coils Coil 44 64 - -
Gma08g03002 495 MobiDBLite consensus disorder prediction 251 267 - -
Gma08g03002 495 MobiDBLite consensus disorder prediction 340 381 - -
Gma08g03002 495 MobiDBLite consensus disorder prediction 475 495 - -
Gma08g03002 495 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Gma08g03002 495 Coils Coil 361 381 - -
Gma08g03002 495 Coils Coil 424 451 - -
Gma08g03002 495 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Gma08g03002 495 Gene3D - 116 177 - -
Gma08g03002 495 SMART G-patch_5 292 338 IPR000467 GO:0003676
Gma08g03002 495 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Gma08g03002 495 SUPERFAMILY CCCH zinc finger 141 165 IPR036855 GO:0046872
Gma08g03002 495 MobiDBLite consensus disorder prediction 363 381 - -
Gma08g03002 495 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03002 Gma-Chr8 46551394 46557703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g03002 G-patch 5e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03002 - - gmx:100796284 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00785 18 8768030 8773678 Gma08g03002 08 46551394 46557703 GST