Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02999 ATGGGTAGGGGTGGAACCGCCGCGGCGGCGGCGGAGGTCGCCGAACCCGGTTTAAGGCCGGTTTATTTCAAAGAACAGCGATATAGGGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCTGCCGAAATCAGAGACCCTTTGAAGAAAGCCAGGGTTTGGCTCGGAACCTTTGACACCGCCGAGGAGGCGGCGCGTGCCTACGACACGGCGGCGAGAACCCTCCGGGGACCAAAGGCGAAGACCAATTTCCCTCTTTCTCCGCCGTTCTACCATCCCGATCCATTTTCCGATCACCGGCACTTCGCCAACACCGGCGAAGATTTCCACGATCACCGGCGACCAACATCCAGTGGCATGAGCAGCACCGTAGAGTCCTTCAGCGGCCCCCGTGCTGCCGTGCCGGCGACAGCGCCGGTGGCCACCGGCCGGAGATATCCCCGGACGCCACCCGTTATCCCCGAGGACTGCCGCAGCGACTGCGATTCGTCGTCCTCCGTCGTTGACGACGGCGAAGGCGACAACGTGGCGTCGTCGTTCCCGCGAGAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTAGACGATGCTGACGTGGCAACCGATGATCTGTTCTGCACCGTTCTTTGCCTCTGA 633 0.6193 MGRGGTAAAAAEVAEPGLRPVYFKEQRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNFPLSPPFYHPDPFSDHRHFANTGEDFHDHRRPTSSGMSSTVESFSGPRAAVPATAPVATGRRYPRTPPVIPEDCRSDCDSSSSVVDDGEGDNVASSFPREPLPFDLNALPLDDADVATDDLFCTVLCL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02999 210 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gma08g02999 210 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gma08g02999 210 MobiDBLite consensus disorder prediction 103 173 - -
Gma08g02999 210 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Gma08g02999 210 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Gma08g02999 210 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Gma08g02999 210 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Gma08g02999 210 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gma08g02999 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 192 - -
Gma08g02999 210 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gma08g02999 210 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02999 Gma-Chr8 46536707 46537339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02999 2 210 AP2-EREBP Transcription Factor Family AT1G50640 58.150 2.34e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma08g02999 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02999 K09286 - gmx:100795762 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02999 08 46536707 46537339 Gma08g02999 08 46536707 46537339 ECH
Gma18g00792 18 8875506 8877082 Gma08g02999 08 46536707 46537339 GST
Gma08g02999 08 46536707 46537339 Gma14g00178 14 1472397 1473809 PCT
Gma08g02999 08 46536707 46537339 Gma02g02761 02 53242850 53243518 PCT
Gma14g00178 14 1472397 1473809 Gma08g02999 08 46536707 46537339 PCT
Gma02g02761 02 53242850 53243518 Gma08g02999 08 46536707 46537339 PCT