Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02972 ATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGCAAGTCTGGAGCTGCGGAACAAGGACATCTTACAAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTAGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGGATTGATGAAGCTGAGGTTGAAAGCCGAAGGAGATGGGCAAGCAGTGCTCGTTCTCAGGTTGGCACAATGAAGAAAGCAATGGAATCTGGCAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGAGAACTGATGAGGCTACCAAATTCTCATCAAACTGATAGCTCCAACCAGTATGCTGCCAGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGACGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTCAGTGAAAGTGTACGAAGAATCGGAGGTGTTGGACTCACAATACATGATGAACTCACTGCACAGGAAAAGATTCTAGATGAGCTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTCCTCTTTATCTTAGTATTCTTCACCTAG 741 0.4359 MPSAQDPFYVVKAEIQDSIDKLQSTFHQWESKSGAAEQGHLTKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEAEVESRRRWASSARSQVGTMKKAMESGKGSSTTSHASVNGMRRELMRLPNSHQTDSSNQYAARDNDDFIQSESDRQTLLIKRQDEELDELSESVRRIGGVGLTIHDELTAQEKILDELGSEMDSTTNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02972 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Gma08g02972 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Gma08g02972 246 Pfam SNARE domain 191 242 IPR000727 -
Gma08g02972 246 SMART tSNARE_6 149 216 IPR000727 -
Gma08g02972 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Gma08g02972 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Gma08g02972 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Gma08g02972 246 Coils Coil 192 212 - -
Gma08g02972 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Gma08g02972 246 Gene3D - 161 225 - -
Gma08g02972 246 CDD SNARE_Qc 157 214 - -
Gma08g02972 246 Gene3D - 2 104 - -
Gma08g02972 246 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02972 Gma-Chr8 46225540 46229675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02972 55 246 SNARE and Associated Proteins AT1G28490 69.271 1.39e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02972 K08500 - gmx:100787129 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00830 18 9636771 9640321 Gma08g02972 08 46225540 46229675 GST
Gma08g02972 08 46225540 46229675 Gma14g00201 14 1693365 1699540 PCT
Gma08g02972 08 46225540 46229675 Gma02g02739 02 53064008 53067960 PCT
Gma14g00201 14 1693365 1699540 Gma08g02972 08 46225540 46229675 PCT
Gma02g02739 02 53064008 53067960 Gma08g02972 08 46225540 46229675 PCT