Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02940 ATGTCGCCGAGCTTCGTCTTCGACCCTCCTAGCGACGAAGAAATCGAACACTCCGAACACGAAGAAGAAGAAGAAGAAGAAtcagtaggagaaccagagtcaggatcagaatcagagtcagaaggagaaGGAGGAGAAGTAGAAGAAGGGCATAAAGAAGCGCGGGTTCCGAAGAAGAAGAAGAAGAAAACACAGTCTCCATGGGACTTCGCCAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCAAAAGCACTCAAACAACGTTCCACGCCTCTCGTTGCTGAGCTCGACCACAGCTCCGAGTCCGAACCTGATGAACAAGAAGATTATAGACCGGAGGAAGAAGATGAAGAAGAGGGTAATGATGGTGACATCAAATCCTTTTTTGCTCCTTCTGGTGGAACCTCTTTCCATGCCGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACACCAATTCAGGCAGCTTGTATTCCATTGGCATTGAGTGGTCGTGATATATGTGGTAGTGCCATTACCGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGATCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCAAAGAGGGCAGGTTCAAAGCTGAAAAGCCGTATTGTTGCTGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCATGAAGAGAGAGAAGAAAGAGTTCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCCAAGGCATCCATGGATAAGTGCAAGAGTTCTGGGAAAGAGGTTATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAGAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGAGGAGGAGGATGACAAACAAGTAGAGACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATTCTGGCAAGATTGTGGAGAAGAATAAAAAGAAATCTAATAATAATTCCCGAAAAACTCCTTCAAGGACAGAAGAGATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGTCAAAAAGAAGAGGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2274 0.4402 MSPSFVFDPPSDEEIEHSEHEEEEEEESVGEPESGSESESEGEGGEVEEGHKEARVPKKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAELDHSSESEPDEQEDYRPEEEDEEEGNDGDIKSFFAPSGGTSFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQMEDQISEVLHEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLAAKASKASMDKCKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEEEEDDKQVETKGGNKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVEKNKKKSNNNSRKTPSRTEEMRELFQTDMKDKKSKRRGVGGGKKSKSSFKSKSRYKRK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02940 757 SMART helicmild6 407 492 IPR001650 -
Gma08g02940 757 MobiDBLite consensus disorder prediction 601 675 - -
Gma08g02940 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Gma08g02940 757 Coils Coil 641 661 - -
Gma08g02940 757 MobiDBLite consensus disorder prediction 689 757 - -
Gma08g02940 757 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Gma08g02940 757 CDD SF2_C_DEAD 369 501 - -
Gma08g02940 757 MobiDBLite consensus disorder prediction 15 44 - -
Gma08g02940 757 MobiDBLite consensus disorder prediction 63 97 - -
Gma08g02940 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 531 IPR001650 -
Gma08g02940 757 Gene3D - 111 359 IPR027417 -
Gma08g02940 757 MobiDBLite consensus disorder prediction 735 757 - -
Gma08g02940 757 SMART ultradead3 171 372 IPR014001 -
Gma08g02940 757 MobiDBLite consensus disorder prediction 113 134 - -
Gma08g02940 757 CDD DEADc_DDX27 163 358 - -
Gma08g02940 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 512 IPR027417 -
Gma08g02940 757 MobiDBLite consensus disorder prediction 601 628 - -
Gma08g02940 757 Pfam Helicase conserved C-terminal domain 389 492 IPR001650 -
Gma08g02940 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Gma08g02940 757 Gene3D - 376 619 IPR027417 -
Gma08g02940 757 PANTHER RNA HELICASE 58 283 - -
Gma08g02940 757 PANTHER RNA HELICASE 308 735 - -
Gma08g02940 757 MobiDBLite consensus disorder prediction 1 142 - -
Gma08g02940 757 Coils Coil 550 570 - -
Gma08g02940 757 PANTHER BNAA01G17110D PROTEIN 308 735 - -
Gma08g02940 757 PANTHER BNAA01G17110D PROTEIN 58 283 - -
Gma08g02940 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Gma08g02940 757 MobiDBLite consensus disorder prediction 689 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02940 Gma-Chr8 45843142 45852444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02940 152 509 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 8.09e-51 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00901 18 10599739 10608952 Gma08g02940 08 45843142 45852444 GST