Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02915 ATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGA 732 0.4303 MEDPNQAPEASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMNMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSRQDHTALQLV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02915 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 12 237 - -
Gma08g02915 243 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Gma08g02915 243 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02915 243 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 Coils Coil 175 195 - -
Gma08g02915 243 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 MobiDBLite consensus disorder prediction 1 24 - -
Gma08g02915 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma08g02915 243 CDD MADS_MEF2_like 17 84 IPR033896 GO:0000977|GO:0045944
Gma08g02915 243 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Gma08g02915 243 Coils Coil 105 125 - -
Gma08g02915 243 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Gma08g02915 243 PANTHER MADS BOX PROTEIN 12 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02915 Gma-Chr8 45514736 45523241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02915 1 243 MADS-box Gene Family AT3G58780 70.000 5.29e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma08g02915 K-box 3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00946 18 11623760 11631767 Gma08g02915 08 45514736 45523241 GST
Gma08g02915 08 45514736 45523241 Gma14g00236 14 2017454 2023740 PCT
Gma14g00236 14 2017454 2023740 Gma08g02915 08 45514736 45523241 PCT