Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02904 ATGTCAGGAAACAGTTCTTTGCATGTGGGATTATCGAGGAAGACTTCGTTTTTGGGATTGCGATTATGGGTTTTGATTGGGATAGGTGTTGGTGTTTTTATAGTTGTGATTCTTTGTGTATTATCTGCATGGGTGATGTTTCGGAGAAAGTCTCGGGGATCTCTGGACAAGTACTCTTTGTCGCAAATACCACATATCTCAAAGGACATCAGAGTCGACAAGGTTGGGGTGCAGACTTCTCACGATCAACCGGACAGTGTAGCTATTCCTGTTTATGACAAACCGAGTGAGAACAACTCGGACAAGTTCTTGGCTCATTTGAGCAAGAACAAATCCGGCGATGCTGATAATATCAGTCAGTGCAGCTCGGTTTATCATCATGAGAGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTGTTAAGAAGCAGTCTGCATCGTCATTTGGAGGAATGGTAACAGCATCTCCTCTAGTTGGCTTGCCAGAATTTTCTCATCTCGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAAATTGCAACTAATCGCTTCTCTCCAGAGAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGCTTGATCAATGGATCCGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTTGTACGATTACTTGGTTATTGCGTAGAAGGGGTTCACAGGTTGCTGGTATATGAATATGTGAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCGCTAGCTtacttacatgaagcaatagaaccgaaagtcgttcaccgggatataaagtcaagcaacatattgattgatactgatttcaatgcaaaggtttctgactttggtttggccaaacttttggattcaggagaaagtcacattactactagagtaatgggaacatttggTTATGTGGCACCGGAATATGCTAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTTGAAGCAGTTACTGGAAGGGATCCTGTGGACTACTCACGTCCTTCTAACGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGAACTGAGGAAGTTGTCGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGTGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACCGCGAGCATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGTTGAAGGGTGGGCATGCACCAGAAACAACTCAAGGGTAG 1527 0.4014 MSGNSSLHVGLSRKTSFLGLRLWVLIGIGVGVFIVVILCVLSAWVMFRRKSRGSLDKYSLSQIPHISKDIRVDKVGVQTSHDQPDSVAIPVYDKPSENNSDKFLAHLSKNKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSASSFGGMVTASPLVGLPEFSHLGWGHWFTLRDLEIATNRFSPENVIGEGGYGVVYRGSLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTDFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPSNEVNLVEWLKMMVGTRRTEEVVDSRLEVKPSIRALKCALLVALRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKLKGGHAPETTQG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02904 508 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Gma08g02904 508 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Gma08g02904 508 MobiDBLite consensus disorder prediction 466 481 - -
Gma08g02904 508 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02904 508 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02904 508 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Gma08g02904 508 PANTHER OS01G0323000 PROTEIN 2 498 - -
Gma08g02904 508 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Gma08g02904 508 PANTHER RECEPTOR-LIKE KINASE PLANT 2 498 - -
Gma08g02904 508 CDD STKc_IRAK 194 460 - -
Gma08g02904 508 MobiDBLite consensus disorder prediction 466 508 - -
Gma08g02904 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gma08g02904 508 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02904 Gma-Chr8 45345812 45349329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02904 19 462 Trihelix Transcription Factor Family AT1G70460 39.602 1.12e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma08g02904 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02904 - - gmx:100784634 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02904 08 45345812 45349329 Gma08g02904 08 45345812 45349329 ECH
Gma18g00965 18 12023373 12027987 Gma08g02904 08 45345812 45349329 GST
Gma08g02904 08 45345812 45349329 Gma14g00254 14 2171394 2175428 PCT
Gma14g00254 14 2171394 2175428 Gma08g02904 08 45345812 45349329 PCT
Gma14g01898 14 49638758 49642752 Gma08g02904 08 45345812 45349329 PCT
Gma02g02121 02 47043209 47047366 Gma08g02904 08 45345812 45349329 PCT