Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma08g02890 | ATGGTCACCTTCAGGTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATATACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCTAAGTTCTGGTACTTCTTGAGAAAGCTAAAGAAGGTAAAGAAAAGCAATGGGCAAATGTTAGCCATCAATGAAATTTTTGAGGAAAAGTCCTACCAAGATCAAGAATTATGGAATTTCGCTGCGATACCAAAGCCGAACTGGGTATCATAA | 273 | 0.4322 | MVTFRFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEEKSYQDQELWNFAAIPKPNWVS | 90 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma08g02890 | 90 | Hamap | 50S ribosomal protein L18Ae [rpl18a]. | 6 | 69 | IPR028877 | - | |
| Gma08g02890 | 90 | Gene3D | - | 1 | 71 | - | - | |
| Gma08g02890 | 90 | PANTHER | 60S RIBOSOMAL PROTEIN L18A | 1 | 68 | - | - | |
| Gma08g02890 | 90 | PANTHER | 60S RIBOSOMAL PROTEIN L18A | 1 | 68 | IPR028877 | - | |
| Gma08g02890 | 90 | Pfam | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | 7 | 71 | IPR023573 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma08g02890 | Gma-Chr8 | 45165231 | 45168131 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma08g02890 | 1 | 69 | Cytoplasmic Ribosomal Protein Gene Family | AT2G34480 | 91.304 | 1.50e-41 | 133 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma08g02890 | K02882 | - | gmx:100306365 | 143.28 |