Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02875 ATGTCTGGTGTTCTTCTTTGGGTGAGTTGTGGACCCAAGGAGAACCCTATCTCCATTGTTGGTCTTGGCGGGAGAGGTGGCAGAAGCCAGAGGAGGTTTGGACTGTGCAATGGGATCAGTTTTGCAAGCTTTTCACCAGCAGTGGCAGACCCTTCAAGATCCTCAGAGGAGAGGGTATATGAAGTGGTGTTGAAACAAGCAGCACTGGTCAAGGAGCAGGACAAGGGTACAAAGAGAGCACTGAATTTGGACAAACCAACAATTGAAGGTGATTTAACCAATGGGGATCTGTTGAGTGATGCTTATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTAGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATATGTGTGGTGCAGAAGAACAGATGAACTAGTGGATGGACCTAATGCTTCTCACATCACACCAAAGGCCTTGGACAGGTGGGAGCAAAGATTATCTGATGTTTTCGAAGGCCGGCCTTATGATATGTATGATGCTGCCCTCTCAGATACAGTCTCAAAGTACCCAGTTGATATACAGCCATTTAAGGACATGATTGAAGGGATGAGGCTTGATCTGAGAAAGTCAAGATACAATAGCTTTGATGAACTCTACCTTTACTGCTACTATGTAGCAGGGACAGTGGGCCTTATGAGTGTTCCAGTAATGGGGATAGCACCAGAATCAAAGGCTACAACAGAGAGCGTTTATAATGCTGCATTGGCACTTGGCATAGCTAATCAACTTACCAACATTCTCAGAGACGTTGGAGAAGATGCAAGAAGAGGAAGAGTATATCTTCCACAAGATGAATTGGCACAAGCTGGCCTAACAGATGATGACATTTTTAGAGGGAAAGTTACCGACAAGTGGCGCAATTTCATGAAGGGCCAAATACAGAGAGCAAGGATGTTTTTTGATGAGGCAGAGAAGGGAGTTTCGGAGCTCAACTCTGCAAGCAGGTGGCCTGTATGGGCATCTTTGTTGTTGTATGGGCAAATCTTAGATTCTATTGAAGCTAATGACTACAATAACTTCACTAAAAGAGCTTATGTAGGAAAAGTTAAGAAGCTCTTATCACTACCTGCTGCTTATGGAAGAGCACTTCTAGGCCCCCAAAAGTTAACCAAGATGGTTACAAGAAGAACCTCTTCTGATTCTGAATCAGATGGAAACCACCAAAAAGGTGGCACCTTTACTGTGTCTTACCTCATCAACTCATGTGGGGTGTCCCCAACACTGGCCAGGAAACTCTCCAATAAGGTCAATTTGAAAACCCCACATGGCCCAAATGCTGTTCTTGATCTTCTCAACAACTATGGGTTTGACAAAATCCAGGTTGCAAAACTTGTTGAGAAACACCCTTTGGTGCTTCTTGCGGATGCAGAGAATACCCTTTTGCCTAAACTCAAGTTCTTACGTTCTATTGGGGTTTCCAACACTGACATGCCTAAGATTTTAATTGCTAACCATAGCTTGAAGAGGAGCTTGAAAAAATTCTTCATCCCAAGATATGAGATCCTCAGACGTGTACTTGGTGATGATCAGGAAGTCGTTAGAGCTATAACAAGTTCCCGATTTGGTATTAATTATGGTGACGCAATGAACTTGGTTCCAAACATTGAGGTTTTGAGGCAGTCTGGTGTGCCCCAAGCTTCTATCTCTTTCATGATGATCCATTGTGGGACTGTAGCCTACTGGAAGCATTCCAGATTTGTGGAAGCTGTCAACACTGCTAAGGAAATCGGGTTTAATCCTTTGAGAACAAATTTTATTGTGGCCATTGAAATGCTTCTGATTAGCAGCAAAGCAGTATGGGAATCAAGGTTTAAGGTTTATGAGAGGTGGGGCTGGAACCGTGAAATGGCTCTTCAAGCATTTCGAAAGTTTCCCAATGTAATGAGGTTGTCAGAGGAGGCATTTAGCAAGAAAATGAATTTCCTAGTGAATGATATGGGTTGGCCATCAGAAGAAATCGCTGAGTATCCTCAAGTTGTAGCATACAACTTAGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATCTTGAAATCAAAAGGTTTGCTTGAGAATAATGTATCCTTTAGTTCCATTATATGCATAACTGAAGAAAAATTTCTGGAAAATTTTGTGATCAGTCTTCAGAAAGATTTGCCTGTCTTACCAGACCTCTATAGAGGTAAGATCAAGCCTTCAGATGTAATGTAG 2250 0.4267 MSGVLLWVSCGPKENPISIVGLGGRGGRSQRRFGLCNGISFASFSPAVADPSRSSEERVYEVVLKQAALVKEQDKGTKRALNLDKPTIEGDLTNGDLLSDAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPKALDRWEQRLSDVFEGRPYDMYDAALSDTVSKYPVDIQPFKDMIEGMRLDLRKSRYNSFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLTDDDIFRGKVTDKWRNFMKGQIQRARMFFDEAEKGVSELNSASRWPVWASLLLYGQILDSIEANDYNNFTKRAYVGKVKKLLSLPAAYGRALLGPQKLTKMVTRRTSSDSESDGNHQKGGTFTVSYLINSCGVSPTLARKLSNKVNLKTPHGPNAVLDLLNNYGFDKIQVAKLVEKHPLVLLADAENTLLPKLKFLRSIGVSNTDMPKILIANHSLKRSLKKFFIPRYEILRRVLGDDQEVVRAITSSRFGINYGDAMNLVPNIEVLRQSGVPQASISFMMIHCGTVAYWKHSRFVEAVNTAKEIGFNPLRTNFIVAIEMLLISSKAVWESRFKVYERWGWNREMALQAFRKFPNVMRLSEEAFSKKMNFLVNDMGWPSEEIAEYPQVVAYNLEKRIIPRFSVIKILKSKGLLENNVSFSSIICITEEKFLENFVISLQKDLPVLPDLYRGKIKPSDVM 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02875 749 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 49 390 - -
Gma08g02875 749 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 49 390 - -
Gma08g02875 749 SFLD Isoprenoid Synthase Type I 99 380 - -
Gma08g02875 749 SMART mt_12 637 668 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 SMART mt_12 669 703 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 SMART mt_12 461 492 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 SMART mt_12 497 528 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 Gene3D Transcription termination factor 3, mitochondrial 502 731 IPR038538 -
Gma08g02875 749 SUPERFAMILY Terpenoid synthases 100 382 IPR008949 -
Gma08g02875 749 Pfam Squalene/phytoene synthase 112 367 IPR002060 GO:0009058
Gma08g02875 749 CDD Trans_IPPS_HH 103 370 IPR033904 GO:0004311
Gma08g02875 749 Gene3D Farnesyl Diphosphate Synthase 93 376 IPR008949 -
Gma08g02875 749 ProSitePatterns Squalene and phytoene synthases signature 2. 256 281 IPR019845 GO:0016765
Gma08g02875 749 Pfam mTERF 447 598 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 Pfam mTERF 612 721 IPR003690 GO:0003690|GO:0006355
Gma08g02875 749 ProSitePatterns Squalene and phytoene synthases signature 1. 220 235 IPR019845 GO:0016765
Gma08g02875 749 SFLD Phytoene synthase like 99 380 IPR044843 GO:0004311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02875 Gma-Chr8 44985153 44991475 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gma08g02875 SQS_PSY 9.8e-71 CL0613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02875 K02291 - gmx:100807453 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02875 08 44985153 44991475 Gma08g02875 08 44985153 44991475 ECH