Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02853 ATGCAATTAAGTCACTTGCAAAAAAATTACGAAAAGTATAATGTTACACCAACCATTTGGATTTGGTGGGCATCTAACTCGGATGTTGGACCCCAACCCACTAGGAAGTGGGAACCTTCTAAGAAAGCCAGTGAAATCGTAAGGACAGAAAGCTCTTGTGTTGAAGTAAAGAATCACTATATTCTTCTTTGTTGCAACAAGTTGGATTGGGACTCTGTACAGAACTACGAAATCATAATGAATGAGCAGCAAAGGATCACTGATGTTGCTTCTTCCTCTAACTCTTCATCTATGTCATCTTCTAAAcaatatgatgttttcctgagctttcgagccggtttagctgggtttgactctcgaaattacagGACTGATCCTGAATTACTTAAGGACATTGTTGGAGCTGTTTTGCGAAAATTGCCTCCTAGATACCAAAACCAACGTAAAGGACTGATTGGAATTGAGGACCATTGTAAACAGATTGAGTCGTTACTAAAAATTGGTTCAAGTGAAGTTAAAACCCTTGGAATATGGGGTATGGGTGGTATAGGTAAAACCACCCTTGCTACTACTTTATATGACAAACTGTCTCATAAGTTTGAAGATGCTTGCTTCCTCGCAAACTTGAGTGAACAATCAGACAAGCCCAAAAATCGTAGTTTTGGTAATTTTGATATGGCTAACTTAGAGCAATTAGATAAAAATCATAGTAGGCTTCAAGATAAAAAAGTTCTCATTATCCTAGATGATGTCACTACCTCAGAGCAATTAGATAAAATAATTCCAGATTTTGATTGTGATTTCTTGGGACCAGGAAGTAGAGTCATTGTTACAACAAGAGATAAACAAATACTTAGCCGAGTTGATGAAATATATCCGGTTGGGGAATGGAGCTTTGataagtctcttcagcttttctgtttgactgcttttggagaaaaacaacctaatgatggctatgcggatctatcaagaatggtggtttcctattgcaaaggtattcctttggctttaaaagtcttgggtgcaagtcttcgatcaagaagtaaagaaatctgggaatgtgaattgagaaaacttcagaagattccaaataaggaaattcataaagtattaaaactaagttatgatggcttagatcgttcggagcaggacatatttctagacattgcatgtttcttcaaaggacgagatagatgttgggtaacaagagtactggaagcttttgagttctttccagcacctgggataaacatccttttagataaagctctcataacaatttcagatagcaatctgatattaatgcatgacttgatacaagaaatgggtcgagaaattgttcatcaagaatctaaagaccctggaagacgaacccgattatggagacatgaggaagtgcacgatgtattgaaatataacaagGGAACTGATGTTGTTGAAGGCATAAGTTTAGATTTGTCTAGATTAAATGAGGATCTAAATTTGAGCTCCAATTCCCTTGCAAAGATGACTAACTTGAGATTTCTTCGAATTGATGGAGAAAGCTGGCTGAGTGACAGAATTTTTAACGGgtaccttcctaatggtcttgaatcattgtacctttctaatgatgttgagccattgtactttcctggtcttgagtcactagtactgtactttcctaatggtcatgtgtcatcgtaccttcctaatggtcttgagtcattttactttcttgatggtcctgtgtcattgtaccttcctaatggtcttgagtcattgtactttcctagtggtcttgagtcattgtCTAATCAACTAAGGTACCTTCACTGGGATCTATGTTATCTTGAGTCTTTGCCACCTAACTTTTGTGCTGAACAGCTAGTAGTGCTTCACATGAAATTTAGCAAGCTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTGTAAATTTGAAGGAAATTGACCTTTCGTATTCCGAAGACCTCATTGAGATCCCAAACTTATCTGAAGCAGAAAATCTTGAAAGCATTTCACTTTCAGGTTGCAAAAGCTTGCATAAACTCCATGTTCATTCAAAATCTCTCCGTGCAATGGAACTTGATGGTTGTTCATCTCTCAAGGAATTCTCAGTAACATCAGAGAAAATGACAAAATTGAACTTATCTTACACCAATATAAGTGAATTGTCATCATCAATTGGTCACTTGGTGTCTTTAGAAAAGTTATACTTAAGGGGAACTAATGTTGAGAGCTTGCCTGCAAATATCAAAAACCTTTCAATGCTGACAAGCCTTCGGCTAGATGGTTGCAGGAAACTCATGTCTCTACCGGAGCTTCCACCATCCTTGAGATTGCTTGATATAAATGGTTctgggtggaactctcgaacttatagGACTGATCCTGAATTACTTAAGGACATAGTTGGAGATGTTTTTCGAAAATTGCCTCCTAGATACCAAAACCAACGTAAAGGACTAGTCGGGATTGAGGAACATTGTAAAAAGATTGAATATTTACTAAAAATTGGGCAAAGTGAAGTTAAAACCCTTGGAATATGGGGCATGGATGGCATAGGTAAAACCACCCGTGCTACTACTTTATATCACAAACTACCTGATGAGTTTGAATATTGTTGCTTCCTCGCAAATGTAAGTGAAAAATCAGACAAGCTCCAAAACCATAGTTTTGGTAATTCTGATATGGCTACCTTTGAGCAATTAGATAAAAATAATAAAGAGCTTGGTTTAGATGATTCAATAACTATTCCTCATCTTCCAACATCTGACTTGTGCGGTTTCGTTTACTGCATCATTCTTTCTGTGGGATCAGCCTTAATTGGTAATGTTTGGTGTTCTACCTATGAAGATGGCATAGAGGTCAGCTGGGACAGAAGCAATATAATATTTATATTTGGATGGAATGGTGATGAAGAGAGGATAAAAGAATGTGGGGTCTTCCCAGTATATGCCACAACATCAGGATTGAAGCTGGTCAGCAATAGTGGCAAAGAAATTTTTGAATGTGAATCCATTGAGTGGGAACAACTTCTACATACATCAAAGAGGAGGAAGATTTCATGCCAGCAGAAATGA 3084 0.274 MQLSHLQKNYEKYNVTPTIWIWWASNSDVGPQPTRKWEPSKKASEIVRTESSCVEVKNHYILLCCNKLDWDSVQNYEIIMNEQQRITDVASSSNSSSMSSSKQYDVFLSFRAGLAGFDSRNYRTDPELLKDIVGAVLRKLPPRYQNQRKGLIGIEDHCKQIESLLKIGSSEVKTLGIWGMGGIGKTTLATTLYDKLSHKFEDACFLANLSEQSDKPKNRSFGNFDMANLEQLDKNHSRLQDKKVLIILDDVTTSEQLDKIIPDFDCDFLGPGSRVIVTTRDKQILSRVDEIYPVGEWSFDKSLQLFCLTAFGEKQPNDGYADLSRMVVSYCKGIPLALKVLGASLRSRSKEIWECELRKLQKIPNKEIHKVLKLSYDGLDRSEQDIFLDIACFFKGRDRCWVTRVLEAFEFFPAPGINILLDKALITISDSNLILMHDLIQEMGREIVHQESKDPGRRTRLWRHEEVHDVLKYNKGTDVVEGISLDLSRLNEDLNLSSNSLAKMTNLRFLRIDGESWLSDRIFNGYLPNGLESLYLSNDVEPLYFPGLESLVLYFPNGHVSSYLPNGLESFYFLDGPVSLYLPNGLESLYFPSGLESLSNQLRYLHWDLCYLESLPPNFCAEQLVVLHMKFSKLKKLWDGVQNLVNLKEIDLSYSEDLIEIPNLSEAENLESISLSGCKSLHKLHVHSKSLRAMELDGCSSLKEFSVTSEKMTKLNLSYTNISELSSSIGHLVSLEKLYLRGTNVESLPANIKNLSMLTSLRLDGCRKLMSLPELPPSLRLLDINGSGWNSRTYRTDPELLKDIVGDVFRKLPPRYQNQRKGLVGIEEHCKKIEYLLKIGQSEVKTLGIWGMDGIGKTTRATTLYHKLPDEFEYCCFLANVSEKSDKLQNHSFGNSDMATFEQLDKNNKELGLDDSITIPHLPTSDLCGFVYCIILSVGSALIGNVWCSTYEDGIEVSWDRSNIIFIFGWNGDEERIKECGVFPVYATTSGLKLVSNSGKEIFECESIEWEQLLHTSKRRKISCQQK 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02853 1027 SUPERFAMILY L domain-like 567 788 - -
Gma08g02853 1027 Pfam NB-ARC domain 159 377 IPR002182 GO:0043531
Gma08g02853 1027 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 745 784 - -
Gma08g02853 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 390 IPR027417 -
Gma08g02853 1027 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 790 896 - -
Gma08g02853 1027 Gene3D Ribonuclease Inhibitor 470 710 IPR032675 -
Gma08g02853 1027 Gene3D Ribonuclease Inhibitor 711 793 IPR032675 -
Gma08g02853 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 745 784 IPR044974 GO:0006952
Gma08g02853 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 888 IPR027417 -
Gma08g02853 1027 Gene3D - 136 291 IPR027417 -
Gma08g02853 1027 Gene3D - 810 918 IPR027417 -
Gma08g02853 1027 Pfam Leucine Rich Repeat 624 642 IPR011713 -
Gma08g02853 1027 PRINTS Disease resistance protein signature 238 252 - -
Gma08g02853 1027 PRINTS Disease resistance protein signature 642 658 - -
Gma08g02853 1027 PRINTS Disease resistance protein signature 331 345 - -
Gma08g02853 1027 PRINTS Disease resistance protein signature 174 189 - -
Gma08g02853 1027 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 111 742 - -
Gma08g02853 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 111 742 IPR044974 GO:0006952
Gma08g02853 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 790 896 IPR044974 GO:0006952
Gma08g02853 1027 Gene3D - 298 380 IPR042197 -
Gma08g02853 1027 SUPERFAMILY "Winged helix" DNA-binding domain 367 472 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02853 Gma-Chr8 44721206 44729403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02853 824 883 WRKY Transcription Factor Family AT5G45050 33.333 6.12e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02853 - - gsj:114424199 1330.47