Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02843 ATGGAACGAAGTGGCGGAATGGTAACTGGGTCGCATGAAAGGAACGAACTTGTTAGAGTTAGACACGGCTCTGATAGTAGGAGTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGTGATGTCTTTGTCGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAACATATGAGCCAGTCTTGTCCCCAGTGCAAGACTGCATTCACAAGTCACCAAGAGGGTGCTGAAGTGGAGGGAgatgatgatgatgaagacgatgctgatgatctagataatgagatcaactatggCCAAGGAAACAGTTCCAAGGCGGGGATGCTATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAACCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGAGTTTCCATGTGCTACTTCTGATGCTCAATCTATGCAAACTACATCTATAGGTCAATCCGAAAAGGTTCACTCACTTTCATATGCTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAAGAGATAAGAAGAGTGCCAGAGATTGGAGGTGAAAGTGCCGGAACTTCGGCCTCTCAGCCAGATGCCGGTTCAAATGCTGGTACAGAGCGTGTTCAGGGGACAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGTAAACGGCTAAAGAGGCTACTGAGGAACCGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAACTCAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAATGGTACCAATAATGCTGAGTGA 945 0.437 MERSGGMVTGSHERNELVRVRHGSDSRSCQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELKHMSQSCPQCKTAFTSHQEGAEVEGDDDDEDDADDLDNEINYGQGNSSKAGMLWEEDADLSSSSGHDSQIPNPHLANGQPMSGEFPCATSDAQSMQTTSIGQSEKVHSLSYADPKQPGPESDEEIRRVPEIGGESAGTSASQPDAGSNAGTERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNNGTNNAE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02843 314 CDD mRING-HC-C4C4_CesA_plant 29 76 - -
Gma08g02843 314 Coils Coil 233 302 - -
Gma08g02843 314 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 156 307 IPR044280 GO:0000981|GO:0045944
Gma08g02843 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 103 IPR013083 -
Gma08g02843 314 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 236 299 IPR004827 GO:0003700|GO:0006355
Gma08g02843 314 MobiDBLite consensus disorder prediction 147 170 - -
Gma08g02843 314 Pfam Zinc-binding RING-finger 25 95 IPR027934 -
Gma08g02843 314 SMART brlzneu 234 298 IPR004827 GO:0003700|GO:0006355
Gma08g02843 314 Pfam bZIP transcription factor 235 296 IPR004827 GO:0003700|GO:0006355
Gma08g02843 314 Gene3D Single helix bin 257 298 - -
Gma08g02843 314 MobiDBLite consensus disorder prediction 82 258 - -
Gma08g02843 314 MobiDBLite consensus disorder prediction 86 102 - -
Gma08g02843 314 SUPERFAMILY RING/U-box 20 99 - -
Gma08g02843 314 MobiDBLite consensus disorder prediction 221 258 - -
Gma08g02843 314 ProSiteProfiles Zinc finger RING-type profile. 29 75 IPR001841 -
Gma08g02843 314 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 156 307 - -
Gma08g02843 314 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 241 256 IPR004827 GO:0003700|GO:0006355
Gma08g02843 314 CDD bZIP_HY5-like 239 290 - -
Gma08g02843 314 MobiDBLite consensus disorder prediction 199 219 - -
Gma08g02843 314 SUPERFAMILY Leucine zipper domain 238 296 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02843 Gma-Chr8 44620512 44624943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02843 182 295 bZIP Transcription Factor Family AT5G11260 74.783 2.37e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma08g02843 zf-UDP 4.1e-31 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02843 - - gmx:547806 599.742