Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02838 atgtcacgcactgatacgatgacaacgacgatgactgcggatcttaatagaactggtccggtggaaagagacattgagcaggctattactgctttaaaaaaaggggcttacttgctcaagtatggaaggagagggaagcccaagttttgtccctttcggctttccaatgatgaatctgttttgatatggttctcagggaaagaagagaagcgccttaaactaactaatgtttctaggattatatctggacaacgcacgCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAGTACCAGTCGTTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCGTTAATTTCTCGCGGCCATCACTGGAAGTGGAGACCAGAGTCAAGAACTGATGGTATTCCGTCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGGTTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCGGTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTACTCGGTGGTGGGGCTCACCATGTTGGGAGTAATTTTGGTGTCAAAATGGACTCTCTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGGAACATGCTGCCATGGTGACCAAACAAGGTGAAGTTTTTTCCTGGGGGGGAGAATCAGGAGGAAGGCTTGGACATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCGGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTTGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAAGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGCGATGGAGACAAAGGTCGACTTGGACATGGTGACAAGGAATCAAAACTTGTTCCCACCCGTGTTGTGACTCTTGATGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATTAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCATTTGGGAAATACTCAAGCTGATGGGAAGCTACCAACCCCTGTCGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACATGGGGGAAGGGTGCAAATGGTTGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCAACATTAGTAGAAGCGCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCTATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGTGTGCCATTCAACTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGCTTTTTGTCATTCATGCAGTAATAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACCGATTCTTCATCTCAGGCTTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTAATGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAATTTTTTTCAGCTTCTGTTCCTGGGTCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCCCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTTCATCGCCAAAGATAGTTGTGGATGATGCTAAGAGAATCAATGATAACCTCAGTCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCCCAGTGGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCTAGGAATGCCAGATCACCACCCTCTCTTGCTTCCTTTGGCTTAAATCCTGGTTCCAATGACCTTACTAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTTAAATGGATCCACTAACCAGTTACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCAGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTTACCTCCTTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGCCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAATACAACGTGCACATGATTGACAAGTCGACAATTGGCGTTGGGAGTGAGGACCTGGCTCATTGA 3330 0.4 MSRTDTMTTTMTADLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRGHHWKWRPESRTDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVYYPIPPMGFFPPDSASGSVHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHHVGSNFGVKMDSLLPKALESAVVLDVQNIACGGEHAAMVTKQGEVFSWGGESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTRVVTLDEPNFCQVACGHSMTVALSRLGHVYTMGSCVYGHLGNTQADGKLPTPVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGCLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLAFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQASMSRRGSVNQGSLEFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKIVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQWKDMAERLPVGASRNARSPPSLASFGLNPGSNDLTNASFDRLNIQATSPESDLNGSTNQLLSNGSSTITNRSAGHIKHSQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVHMIDKSTIGVGSEDLAH 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02838 1109 Gene3D - 503 666 IPR009091 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 609 660 IPR000408 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 492 IPR000408 -
Gma08g02838 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 739 IPR013083 -
Gma08g02838 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Gma08g02838 1109 SUPERFAMILY FYVE/PHD zinc finger 661 731 IPR011011 -
Gma08g02838 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 386 440 IPR000408 -
Gma08g02838 1109 CDD PH_PLC_plant-like 23 133 - -
Gma08g02838 1109 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 25 1095 - -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 730 752 - -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 839 867 - -
Gma08g02838 1109 Pfam Pleckstrin homology domain 26 132 IPR001849 -
Gma08g02838 1109 SMART fyve_4 659 728 IPR000306 GO:0046872
Gma08g02838 1109 MobiDBLite consensus disorder prediction 794 810 - -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 317 330 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 386 402 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 427 443 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 443 457 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 546 564 IPR000408 -
Gma08g02838 1109 PRINTS Chromosome condensation regulator RCC1 signature 604 625 IPR000408 -
Gma08g02838 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 665 727 IPR017455 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 385 IPR000408 -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 987 1027 - -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 987 1037 - -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 730 810 - -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 610 657 IPR000408 -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 440 489 IPR000408 -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 334 382 IPR000408 -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 557 605 IPR000408 -
Gma08g02838 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 385 437 IPR000408 -
Gma08g02838 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 320 330 IPR000408 -
Gma08g02838 1109 Gene3D - 253 502 IPR009091 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 272 333 IPR000408 -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 143 196 - -
Gma08g02838 1109 MobiDBLite consensus disorder prediction 148 177 - -
Gma08g02838 1109 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Gma08g02838 1109 Gene3D - 24 139 IPR011993 -
Gma08g02838 1109 SUPERFAMILY PH domain-like 24 132 - -
Gma08g02838 1109 Coils Coil 871 940 - -
Gma08g02838 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 25 1095 - -
Gma08g02838 1109 Pfam FYVE zinc finger 661 727 IPR000306 GO:0046872
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
Gma08g02838 1109 CDD FYVE_like_SF 670 723 - -
Gma08g02838 1109 Pfam Unstructured region between BRX_N and BRX domain 964 1033 - -
Gma08g02838 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 479 489 IPR000408 -
Gma08g02838 1109 Pfam Transcription factor BRX N-terminal domain 922 955 IPR027988 -
Gma08g02838 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Gma08g02838 1109 SUPERFAMILY RCC1/BLIP-II 271 662 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02838 Gma-Chr8 44573495 44583808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02838 931 1100 Major Intrinsic Protein MIP AT1G31880 35.955 2.47e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02838 - - gmx:100797527 2146.32