Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02830 ATGACACAGCaatcatgttcctcttcttccacatgtgagtggacttatgatgtgttcctcagtttcagaggcgatgatactcgaagtggtttcactggaagcctttacaagtctctttgtgaccagggaatccacaccttcatggatgatgaggggctcagaagaggggaagagattagacatgctcttttcaaggcaattcagcagtcaagaattgccattgttgttttctctgaaaactatgcttcctcaacttactgtcttgaagagcttgtcatgatccttgagtgcataatgaagaagggtcgcttggtttggccggttttttacggggtgactccgtcttatgtgcgacatcagaaaggttcttatgggaaagcattggacaagcttggagaaagatttaagaatgataaggagaagctgcaaaagtggaagcttgctcttcaagaagcagctaatttgtctggTTCACATTTCAAACTCAAACATGGGTATGAACATGAAGttattcagaaaattgttgaagaggtgtccagaaagataaatcgtagccctttacatgtggctaattatccaattggattggagtctagagtgcaagaggtgaactcacttttggatgttggatccaatcaaggagtaagcatggtggggatttatggaattgggggaatagggaagaccgctattgcttgtgcagtgtacaatttgattgctgatcaatttgaaggtcagtgtttccttggtgatatcagagaaaaatcaaagcatggcttagtagagcttcaggaaacaatactttctgaaatggttggggagaagagtatcaagttggggagtactaatagggggaaggcagtattgaaaagcaagcttcaacgaaagaaagttcttttgattcttgatgatgttgatagattagagcaattaaaggcacttgctggtgatccttcctggtttggtcatggcagcagaatcattgtcacgacaacggataagcatttgttacgtgtacatggtgttgaaagaaggtacgaagcaaaaggattggatgataaagaagctcttgagttgtttagttggcatgcttttaaaagcaatgaggttagtccaagttacatggatatctctaagcgtgcagtactttattccaatggccttccattggctttggaaataataggttctaacttaaatggtaaaacaatgcctgaatggcaagcagcattggataccattgaaagaaatccagatgaagatattcaggaaaaactaaaagttggctatgatggtttgaaaagaaatgagaaggaagttttccttgacatcgcttgtttctttagaggctccgatttgaaagatgtcacaagtttattgttccaaggtcgtggtttctctcccgagtatgttattcgagtgttgatcgataaatctctcataaagattgataaatacggttttgtgagaatgcataacttggtagagaacatgggtagagaaattgttaagcaggaatcaccatcagaacctggaaaacgcagtagattatggctttatgaggatatTGTTGATGTTTTAGAAAATGACAAGGGAACTGATACAATTGAAGTAATCATGCTACACTCGCCAAAGAATAAAGAAGTACAATGGAATGGAAGTGAGCTCAAGAAGATGACAAACCTAAAATTACTATCTATTGAAAATGCTCACTTTTCTAGAGGCCCTGTGCATCTCCCAAATAGTTTGAGAGTACTAAAATGGTGGGGATATCCTTCACCGTCTTTGCCACCTGAATTTGATTCAAGGAGACTTGTTATGTTAGACTTGTCCAATAGTTGCAATATAATGGGCAAACAACTCAAATTCATGAAGTTCGAGTCTTTGAGCGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAAACACCTGACATGTCTGGAGCACAAAATTTAAAGAAGCTGTGTCTTGATAACTGCAAGAATTTAGTAGAAGTTCATGATTCAATCGGGCTTCTTGACAAAATTACATGGTTCACTGCTGTTGGATGCACCAATCTAAGGATTCTTCCCCGTAGCTTCAAGTTAACATCACTTGAACATCTGTCTTTCAAAAAATGCTCAAATCTCCAGTGTTTGCCAAATATATTAGAGGAAATGAAACATGTAAAAAAACTTGATCTGTGTGGAACTGCTATTGAAGAATTGCCATTTTCTTTTAGGAAACTTACAGGGCTTAAATATCTAGTGCTGGACAAGTGCAAGATGCTTAATCAGATCCCAATAAGCATTCTGATGTTACCGAAACTTGAGAAATTGACAGCCATAAAATGTGGACGGTATGCAAATTTGATCCTTGGTAAAAGTGAAGGACAAGTAAGATTGAGTTCATCTGAGTCTTTGAGAGATGTTAGATTAAACTACAATGATTTGGCACCTGCCAGCTTCCCCAATGTGGAATTTTTAGTGCTAACTGGCAGTGCTTTCAAAGTCCTTCCCCAATGCATCAGCCAATGTCGCTTTCTCAAGAATCTAGTTTTGGACAATTGCAAGGAGCTTCAAGAAATCAGAGGGGTTCCTCCAAAGATAAAATATCTCTCAGCAATAAACTGCACATCATTGTCTCATGAGTCTCAAAGCATGTTATTGAATCAGAGATTACACGAGGGTGGTGGCACAGATTTTTCCCTTCCAGGAACAAGGATACCGGAATGGTTCGACCATTGTACTACAGGACCATTGCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGGCTCTAGCTGTTGTTGGAGTTTTGGACAAGCAGGGAAGCTTTCCCATGTCAAGATTCCACTTGCTCATTAATGGCATTCAAAAGCTGCATTGCCTTTTCACCGCACAATCAAAACTAACCACGTATCATATATTCCTGTCCGATGTGCAGCTGAAATCCTACAATGGCGAATTGCAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGATTTCATATGTGAGACCAAGTGCCTTTCCACATTCATGCAGAGCCAAGAGAGGAACCATCAAATTGATGGGGGTTCATGTTTACAAGCAAAAAACAAGCATGGAGGGTGTCCGGTTCACGAATCCTTGGTCTCCAAAGAGATCATACAGCGAAGTTTCCAAGCCTAGTTTGAAAGAAAATTTTCAGTCACTGGCCAAAAGAAGCCGTGGATCACAAGGCATGGAAATTTGTGAGGCACCACGCATGAAGCAGCATGAAGTGAATAGTGGTTATCACAGTGTATCACAGAGACTATGgaaaacctgtcaatCCATTGATTTTAAGATACTCAAAATAATGCCGTGCAATATGAGATTATGGGCCATGGATAAATCATAA 3369 0.217 MTQQSCSSSSTCEWTYDVFLSFRGDDTRSGFTGSLYKSLCDQGIHTFMDDEGLRRGEEIRHALFKAIQQSRIAIVVFSENYASSTYCLEELVMILECIMKKGRLVWPVFYGVTPSYVRHQKGSYGKALDKLGERFKNDKEKLQKWKLALQEAANLSGSHFKLKHGYEHEVIQKIVEEVSRKINRSPLHVANYPIGLESRVQEVNSLLDVGSNQGVSMVGIYGIGGIGKTAIACAVYNLIADQFEGQCFLGDIREKSKHGLVELQETILSEMVGEKSIKLGSTNRGKAVLKSKLQRKKVLLILDDVDRLEQLKALAGDPSWFGHGSRIIVTTTDKHLLRVHGVERRYEAKGLDDKEALELFSWHAFKSNEVSPSYMDISKRAVLYSNGLPLALEIIGSNLNGKTMPEWQAALDTIERNPDEDIQEKLKVGYDGLKRNEKEVFLDIACFFRGSDLKDVTSLLFQGRGFSPEYVIRVLIDKSLIKIDKYGFVRMHNLVENMGREIVKQESPSEPGKRSRLWLYEDIVDVLENDKGTDTIEVIMLHSPKNKEVQWNGSELKKMTNLKLLSIENAHFSRGPVHLPNSLRVLKWWGYPSPSLPPEFDSRRLVMLDLSNSCNIMGKQLKFMKFESLSEMVLRGCRFIKQTPDMSGAQNLKKLCLDNCKNLVEVHDSIGLLDKITWFTAVGCTNLRILPRSFKLTSLEHLSFKKCSNLQCLPNILEEMKHVKKLDLCGTAIEELPFSFRKLTGLKYLVLDKCKMLNQIPISILMLPKLEKLTAIKCGRYANLILGKSEGQVRLSSSESLRDVRLNYNDLAPASFPNVEFLVLTGSAFKVLPQCISQCRFLKNLVLDNCKELQEIRGVPPKIKYLSAINCTSLSHESQSMLLNQRLHEGGGTDFSLPGTRIPEWFDHCTTGPLLSFWFRNKFPRMALAVVGVLDKQGSFPMSRFHLLINGIQKLHCLFTAQSKLTTYHIFLSDVQLKSYNGELQSVYGEDGWNHVEISYVRPSAFPHSCRAKRGTIKLMGVHVYKQKTSMEGVRFTNPWSPKRSYSEVSKPSLKENFQSLAKRSRGSQGMEICEAPRMKQHEVNSGYHSVSQRLWKTCQSIDFKILKIMPCNMRLWAMDKS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02830 1122 PRINTS Disease resistance protein signature 217 232 - -
Gma08g02830 1122 PRINTS Disease resistance protein signature 385 399 - -
Gma08g02830 1122 PRINTS Disease resistance protein signature 292 306 - -
Gma08g02830 1122 PRINTS Disease resistance protein signature 741 757 - -
Gma08g02830 1122 Gene3D - 350 434 IPR042197 -
Gma08g02830 1122 Gene3D Ribonuclease Inhibitor 718 889 IPR032675 -
Gma08g02830 1122 Gene3D Ribonuclease Inhibitor 536 717 IPR032675 -
Gma08g02830 1122 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 1000 IPR044974 GO:0006952
Gma08g02830 1122 PANTHER ARCHAEAL ATPASE 26 1000 - -
Gma08g02830 1122 Pfam NB-ARC domain 197 425 IPR002182 GO:0043531
Gma08g02830 1122 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Gma08g02830 1122 SMART till_3 15 155 IPR000157 GO:0007165
Gma08g02830 1122 SUPERFAMILY L domain-like 538 882 - -
Gma08g02830 1122 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Gma08g02830 1122 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Gma08g02830 1122 Gene3D - 186 344 IPR027417 -
Gma08g02830 1122 Pfam TIR domain 16 185 IPR000157 GO:0007165
Gma08g02830 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Gma08g02830 1122 Gene3D - 10 185 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02830 Gma-Chr8 44487291 44492118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02830 16 778 WRKY Transcription Factor Family AT4G12020 32.824 8.53e-91 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02830 - - gmx:100810811 2198.32