Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02828 ATGGAAGAGAGAAATGATAATGGTGAGAAACTAGATGAGGTTATGCTACCCGGTTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGATTTTACCTTAAGAGAAAGATTCAGCAGAGGCCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATCTACAAGTATGATCCTTGGGATCTTCCAAAAATGGCCACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCAAATAGGGTAACAGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATCGCCCTATCTATTCCTCGGAGGGTTCTAAGTGCATTGGTTTGAAGAAATCTCTAGTGTTCTACAAAGGAAGAGCTGCCAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTAGACTACCATCTCTCACTCACCCACCCTCATCCCTCAAGAAGTTCATGGACAAGACTATTCCTGCTAACGAATCCTGGGCAATCTGCAGGATCTTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCACATTCTTGGGTCTCACCATTACCTGAAACCACAACTACTAATTCTGATCATATGATAACTACTGATCATAGAGACATCAACCAATTTTGTCAAGCAAACATGCCATTCACAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTCAATCACAATGACACACAACACTCATCAACTACTACTAGCACCACTCCTTGTCCTTTAGATGTTGTAGCCTCTTACAACAAACCACTTATGAATCCATTAATGCTTTACAAATCTTTAGATCGGTTACCCTTTTCAAATTATGGAGACCTTCTTACCAGTGGCTTGATATTCTCATCTCCTCTTGAAACTTCAACAACAACCAATGCTAAATCTTCAATGGATGCTTCTTCCTTGCTTTTGAGCACATCATCTTCTGTTCTTGGAGAATTTAGTAAGAACTCTGAGGGTATAATAACCACAAACTTTGGTGTGTTACAAGAGCATGGTAATGACTACCAAATACCATTACTACGTGACAACATGCAAGGGACATTTGGTAACCACGATGATAACAATGTGTTGGTAAAGATTCCTAATGTGAATGTGGTGCCTCGTGTTGGTGACCAACAATTGGAGACAGTGCGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGCCAAATATGCTTTGGGATGCTTCATCTTTGTCCTTGTAA 1242 0.4155 MEERNDNGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTHPPSSLKKFMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTTNSDHMITTDHRDINQFCQANMPFTKKTSLASQFCTFNHNDTQHSSTTTSTTPCPLDVVASYNKPLMNPLMLYKSLDRLPFSNYGDLLTSGLIFSSPLETSTTTNAKSSMDASSLLLSTSSSVLGEFSKNSEGIITTNFGVLQEHGNDYQIPLLRDNMQGTFGNHDDNNVLVKIPNVNVVPRVGDQQLETVRSIGFPFNIGDAWKPNMLWDASSLSL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02828 413 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Gma08g02828 413 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Gma08g02828 413 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 410 - -
Gma08g02828 413 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
Gma08g02828 413 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Gma08g02828 413 PANTHER PROTEIN FEZ ISOFORM X1 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02828 Gma-Chr8 44480903 44483534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02828 1 324 NAC Transcription Factor Family AT1G26870 58.084 8.98e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma08g02828 NAM 3.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02828 - - gmx:100810284 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02828 08 44480903 44483534 Gma08g02828 08 44480903 44483534 ECH
Gma18g01065 18 14667855 14669949 Gma08g02828 08 44480903 44483534 GST
Gma08g02828 08 44480903 44483534 Gma14g00268 14 2283798 2287424 PCT
Gma08g02828 08 44480903 44483534 Gma02g02668 02 52545436 52548758 PCT
Gma14g00268 14 2283798 2287424 Gma08g02828 08 44480903 44483534 PCT
Gma02g02668 02 52545436 52548758 Gma08g02828 08 44480903 44483534 PCT