Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02810 ATGGCTGATCCTCAGAAAACGGCTCCTGGCGAGAGAAACATCGAGCAGgcaattacatctcttaagaaaggctcatatctgctgaagtacgggcgaagagggaagccgaagttctgcccatttaggctttccaatGACGAGTCTCTACTCTTATGGTACTCTGGCAAGGAAGAGAAACAGCTTAAGCTCAGTACGGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGTAAGGATAAAGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGGTAACAACTGCAAGTGGAGATTGGAATCAAGAACTGATGACAGTTTGTATTATGATAGTCCAAATTCTGGCACACGAAGATCCACTCCATCATTCTCTGACCCTGGAGATGCTGGCGGAGGTGCTTTTGATTTGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTACACTGCAGCTAGTAAGAGTTCCAGCCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCATAGGTGATGTTTTTATTTGGGGAGAAGGTATCGCCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCACTAGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTATAGTTACCAAGCAGGGAGATATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTTGAAATGGATGTTTTTCACCCGAAGCTCATTGACACTCTTGGTGGCGTGAATATCGAGTTAGTAGCATGTGGAGAATATCATACGTGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTACGCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTGGGACATGGAGATCTTAGTAGCGCAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGGTAAATGAATCTGTGGAATCTTCTACACGCTCATCTAATGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACTTGTATATACAATGGGAAGTACAGCACATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACACGTGTTGGAGATAAAATTGCTGATAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAGTGATCACAGGAATAAACCTGCACTTGTTGAGTTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACTTGTGTTGGATGTCGCAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCATGCACCAGCAAGAAGTCTATAAAAGCTTCCCTTGCTCCCAGTTCCAACAAGCCGTATCGAGTCTGTGATGACTGTTATCTTAAACTTAAGAAAGCTGCCGCTGAATCAGTACCCTCGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGACAATAGAATCACTAAAGTACAGGGAACACTATTAAGGCTTGCATCTTTTGGCTCTATTATTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAAGATAGCCATCTTTTCCCAGCTTTAAATGGAAAACCACTGATGAGGGGTTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTATTGATTCCAAGAAACACCTTTCAGTTTCTGAGCCTTCTGCAAGAATATCTTGTCAATCAACATCATCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATAAATGACCATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACACAGGTTGAAGACCTTACTCACAAGTCAAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGATCATAAAGTCATTGACTGCACAGTTGAAAGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTGACTCCAGTACAGAGCCCTATGCTGAAAACAGTAGTAGTATTCTGCATCATTCCTTAGATGAGAGCCATATAAGAAACACGGTCATTCCCAAAAATGAAGGCAGCAGCAATGTATCAAATCTGATATTAGCTAATGGTGCCAAAACACAAAGTGTAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTATGTAAGTTTGTCCTCACAGCCAGGTGGTGGTAATGAGCTTAGGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAACGAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3045 0.4049 MADPQKTAPGERNIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNNCKWRLESRTDDSLYYDSPNSGTRRSTPSFSDPGDAGGGAFDLQNRWVKAFSEIISYTAASKSSSQAESLANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSIGDVFIWGEGIADGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVIVTKQGDIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGVNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGMLGHGNEVSHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLSSANIPREVETLKGLRTTRVACGVWHTAAVVEVVNESVESSTRSSNGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGLVYTMGSTAHGQLGCPASDGKVPTRVGDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDSDHRNKPALVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSTCVGCRNPFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPSSNKPYRVCDDCYLKLKKAAAESVPSVQTPSLRSVSLQDNRITKVQGTLLRLASFGSIIQTESSQSKLPDSQDSHLFPALNGKPLMRGFAPSKSSNSLSIDSKKHLSVSEPSARISCQSTSSVSSKSSPRQSYEDINDHLKHRNDILSQEVISLRTQVEDLTHKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEIIKSLTAQLKEMVERLPEGHNTDSSTEPYAENSSSILHHSLDESHIRNTVIPKNEGSSNVSNLILANGAKTQSVKAEWVVQDEPGVYVSLSSQPGGGNELRRVRFSRRHFTEEQAEKWWAENGTKILERHNIVAL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 355 IPR000408 -
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 580 631 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 581 628 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 411 459 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 355 406 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 475 524 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 304 352 IPR000408 -
Gma08g02810 1014 Pfam Regulator of chromosome condensation (RCC1) repeat 527 576 IPR000408 -
Gma08g02810 1014 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1008 - -
Gma08g02810 1014 SUPERFAMILY RCC1/BLIP-II 240 633 IPR009091 -
Gma08g02810 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 707 IPR013083 -
Gma08g02810 1014 CDD PH_PLC_plant-like 12 122 - -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 306 322 IPR000408 -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 397 413 IPR000408 -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 413 427 IPR000408 -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 517 535 IPR000408 -
Gma08g02810 1014 PRINTS Chromosome condensation regulator RCC1 signature 575 596 IPR000408 -
Gma08g02810 1014 Coils Coil 825 866 - -
Gma08g02810 1014 MobiDBLite consensus disorder prediction 140 155 - -
Gma08g02810 1014 MobiDBLite consensus disorder prediction 140 160 - -
Gma08g02810 1014 SUPERFAMILY FYVE/PHD zinc finger 632 700 IPR011011 -
Gma08g02810 1014 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 449 459 IPR000408 -
Gma08g02810 1014 Coils Coil 874 894 - -
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 410 IPR000408 -
Gma08g02810 1014 ProSiteProfiles BRX domain profile. 955 1010 IPR013591 -
Gma08g02810 1014 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Gma08g02810 1014 Pfam Transcription factor regulating root and shoot growth via Pin3 954 1009 IPR013591 -
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 528 579 IPR000408 -
Gma08g02810 1014 MobiDBLite consensus disorder prediction 769 814 - -
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Gma08g02810 1014 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1008 - -
Gma08g02810 1014 MobiDBLite consensus disorder prediction 771 812 - -
Gma08g02810 1014 Gene3D - 367 465 IPR009091 -
Gma08g02810 1014 Gene3D - 173 366 IPR009091 -
Gma08g02810 1014 Gene3D - 13 129 IPR011993 -
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Gma08g02810 1014 SUPERFAMILY PH domain-like 14 121 - -
Gma08g02810 1014 SMART fyve_4 628 699 IPR000306 GO:0046872
Gma08g02810 1014 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 303 IPR000408 -
Gma08g02810 1014 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 636 698 IPR017455 -
Gma08g02810 1014 Pfam Transcription factor BRX N-terminal domain 869 897 IPR027988 -
Gma08g02810 1014 Pfam FYVE zinc finger 632 698 IPR000306 GO:0046872
Gma08g02810 1014 Gene3D - 468 639 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02810 Gma-Chr8 44288918 44298686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02810 871 1011 Major Intrinsic Protein MIP AT1G31880 30.168 4.99e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02810 - - pvu:PHAVU_003G066900g 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02810 08 44288918 44298686 Gma08g02810 08 44288918 44298686 ECH