Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02807 ATGTCTAGCAGAAGATCTCGTTCGAGACAATCGGGTGTTTCCACTGagatcactgatgctcagatcactgatctcaTCTCAAAGTTACAACAACTGATCCCTGAGCTACGCGCAAGACGTTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACTTGCAACTACATCAAAAGCTTGCACAGAGAGGTTGATGATCTAAGTGACCGGTTGTCACAACTTTTGGCCACCACCGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4149 MSSRRSRSRQSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02807 93 Coils Coil 57 77 - -
Gma08g02807 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
Gma08g02807 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gma08g02807 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gma08g02807 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Gma08g02807 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Gma08g02807 93 CDD bHLH_AtPRE_like 17 77 - -
Gma08g02807 93 Gene3D - 19 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02807 Gma-Chr8 44180771 44182345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02807 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 6.72e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g02807 HLH 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02807 - - gmx:100791371 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02807 08 44180771 44182345 Gma08g02807 08 44180771 44182345 ECH
Gma08g02807 08 44180771 44182345 Gma06g01712 06 17282371 17284398 ECH
Gma08g02807 08 44180771 44182345 Gma04g01671 04 45393776 45395428 ECH
Gma08g02807 08 44180771 44182345 Gma19g00188 19 2306892 2310132 ECH