Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02800 ATGGGTAACTGCCTAGATTCTTCAGCCAAAGTAGAAGCTGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAAACTAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCTGTCATATAGTGAAGCAAGTGATTTCTCAAATCTTCCAACACCAAGGTCTGAGGGCGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTCAATGAGCTAAAGAATGCCACCAGGAACTTTCGCCCGGACAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTCAAACCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGACAACTACACCATCAGAATCTGGTAAAATTGATTGGATACTGTGCAGATGGAGAGAACCGGTTGTTGGTATACGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTTTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCTAGAGGACTTTCTTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCCAATATCCTACTAGACGCAGAGTTCAATGCTAAGCTCTCTGATTTTGGCTTAGCAAAGGCTGGGCCTACGGGTGATAGAACTCATGTCTCCACTCAAGTCATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGAGTTGTGTTGCTTGAACTATTGTCCGGTAGACGAGCCGTTGACAGATCAAAAGCCGGTGTAGAGCAGAATCTAGTAGAATGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTCGGATCATGGACACCAAATTGGGAGGCCAATACCCACAAAAAGGAGCCTATATGGCGGCCACTCTTGCTCTAAAATGCCTTAATCGTGAAGCCAAGGGAAGGCCTCCGATTACAGAGGTTTTACAAACTCTTGAACAGATTGCAGCCTCAAAAACTGCAGGAAGAAACTCCCAATTAGAACAAAAGAGAGTCCATGCTCCTGTCAGAAAGTCTAGTGTGCAAAAGGGGTCCCATTTGAATCATACTCCTACTGCATTCCCATAA 1209 0.4376 MGNCLDSSAKVEAAHSSRTPSGISKTSPSSVPSNLSILSYSEASDFSNLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCADGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRSKAGVEQNLVEWAKPYLGDKRRLFRIMDTKLGGQYPQKGAYMAATLALKCLNREAKGRPPITEVLQTLEQIAASKTAGRNSQLEQKRVHAPVRKSSVQKGSHLNHTPTAFP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02800 402 CDD STKc_IRAK 85 362 - -
Gma08g02800 402 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Gma08g02800 402 MobiDBLite consensus disorder prediction 366 402 - -
Gma08g02800 402 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 402 - -
Gma08g02800 402 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Gma08g02800 402 MobiDBLite consensus disorder prediction 388 402 - -
Gma08g02800 402 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Gma08g02800 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gma08g02800 402 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02800 402 MobiDBLite consensus disorder prediction 1 33 - -
Gma08g02800 402 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gma08g02800 402 Gene3D Transferase(Phosphotransferase) domain 1 165 387 - -
Gma08g02800 402 MobiDBLite consensus disorder prediction 10 33 - -
Gma08g02800 402 PANTHER OS01G0588500 PROTEIN-RELATED 11 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02800 Gma-Chr8 44047189 44050395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02800 55 359 Glycoside Hydrolase AT3G07070 53.896 5.78e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma08g02800 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02800 - - gmx:100305401 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02800 08 44047189 44050395 Gma08g02800 08 44047189 44050395 ECH
Gma20g00480 20 9391883 9396352 Gma08g02800 08 44047189 44050395 GST
Gma08g02800 08 44047189 44050395 Gma14g00342 14 3065283 3069242 PCT
Gma14g00342 14 3065283 3069242 Gma08g02800 08 44047189 44050395 PCT