Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02793 ATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGtgatgaaggtaaagtcagaaaaattttgaaggtggagcctcttccagatggttctggacacttctttaacctaaGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCACACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 810 0.4037 MSNLQLQLHSPPPSSLLSSSSSPSSLYSSSSLKLFPNHPFSTKSLPFNNHKHFSLRCRHTDLFDQNTIASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNNLVNVDESIYIPVTKAELAVLTSTFNFIMPYLLGWHTFANSIKPEDNGVNNANPRYGGDYEWNR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02793 269 Gene3D Transcriptional Coactivator Pc4; Chain A 79 252 IPR009044 GO:0003677|GO:0006355
Gma08g02793 269 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 269 IPR009044 GO:0003677|GO:0006355
Gma08g02793 269 Pfam Whirly transcription factor 94 228 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma08g02793 269 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 5 269 - -
Gma08g02793 269 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 5 269 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gma08g02793 269 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02793 Gma-Chr8 43908253 43911647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02793 7 269 Whirly Transcription Factor Family AT1G14410 62.687 7.76e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gma08g02793 Whirly 2.8e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02793 - - gmx:100789252 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02793 08 43908253 43911647 Gma08g02793 08 43908253 43911647 ECH