Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02792 ATGTTTTCCAACCAGGTTCACGTGTTCCGCTCTCCATTTCGCGTTCTGAAATATCCACGCACGAAAACCCCACCCAACACGCGTCTCTTCCTTCTTCTGCTTCATGCCAACAACAACAACAACACAAACGCTGGCACATCACCAACCTTCCTCTGTTCATCACTCAGTGATGACTCCTTTTCCACCCCAAAACCAAACCAGGCACACACTTTTTTTTTTTCTTTTCTCTTACATTTTTTTCTGTTCTTCATCACGGCTAATTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACCCCTTGTACAGGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAACAACCATGGGAGAGGGCCCGTTCTATCTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCTCCACCTCCAGAAGTTGGATTAAAGATCAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACAGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATACTTCCAAAATTATGAAAGCTTACTTTAGTGATCCAGTAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGTGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAATGATAGCTTGGTTGATCGGCGATTCACGTGTAGGCTCTGCGGGGGGAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAAGATAAGCCTTAGCAATGGAAGAACAATAAAACACCATCAGTGCAAAATATGTCACCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTTTGCTGTTCCTAGTAAAAGAAGGAACGCGGCCTCTCGAAGACCATACAAATGTAGGTTGTGTAAGAAGGAGGGGCATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAGAATCCTCAAGATTAA 1215 0.4428 MFSNQVHVFRSPFRVLKYPRTKTPPNTRLFLLLLHANNNNNTNAGTSPTFLCSSLSDDSFSTPKPNQAHTFFFSFLLHFFLFFITANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTGTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARKHTSKIMKAYFSDPVNRQKRSMAMKGVKFYCQNCGREGHRRHYCPELNDSLVDRRFTCRLCGGKGHNRRTCRKLKISLSNGRTIKHHQCKICHQFGHNRRTCPQAVPFAVPSKRRNAASRRPYKCRLCKKEGHNIRTCPSRTVVTENPQD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02792 404 ProSiteProfiles Zinc finger CCHC-type profile. 285 300 IPR001878 GO:0003676|GO:0008270
Gma08g02792 404 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 84 397 - -
Gma08g02792 404 SMART c2hcfinal6 284 300 IPR001878 GO:0003676|GO:0008270
Gma08g02792 404 SMART c2hcfinal6 311 327 IPR001878 GO:0003676|GO:0008270
Gma08g02792 404 SMART c2hcfinal6 378 394 IPR001878 GO:0003676|GO:0008270
Gma08g02792 404 SMART c2hcfinal6 342 358 IPR001878 GO:0003676|GO:0008270
Gma08g02792 404 Pfam Zinc knuckle 375 393 IPR025829 -
Gma08g02792 404 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 84 397 - -
Gma08g02792 404 Gene3D - 338 400 - -
Gma08g02792 404 Gene3D - 282 333 - -
Gma08g02792 404 SUPERFAMILY Retrovirus zinc finger-like domains 335 395 IPR036875 GO:0003676|GO:0008270
Gma08g02792 404 SUPERFAMILY Retrovirus zinc finger-like domains 282 328 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02792 Gma-Chr8 43901630 43906792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02792 75 397 C2H2 Transcription Factor Family AT5G20220 65.443 3.83e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02792 - - gmx:100800156 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02792 08 43901630 43906792 Gma08g02792 08 43901630 43906792 ECH