Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02790 ATGGCGAACTGTCAGCAATATTATTTTCTTTTGCTTTCTCTGGCAATTTTTATTCCTACCCTGAATGCCAATTCCTTAGAGAAAGATGAGTATTGGCAGAGCCATGTCTATGAGTTTGATAGTTATTGGCAGGAAAGGGCAAAAGCCGCTAAAGTGGACAGTCAGGCAGCTTATTTTGAAGACCCATATTCAGTCTCCAGCAACTTCACTTCCAGTGTTAGCGAACTCACAATTGGCAAGAAGGATTTACGAAGGAACTTGAAGGGAAAATATCGTGGTGACGGTCCATGCATAGCCACAAACCCCATCGACAGGTGTTGGAGGTGTGACCCCAATTGGGCCAACAATCGCCAGAAGCTCGCAGATTGCGTCCAAGGCTTCGGTAGAAACACCGTTGGAGGCAAAGGTGGACCATTCTACGTGGTCACCGATCCCTCCGACGATGATATGGTGAACCCTAAACCCGGCACGCTCCGCCACGCGGTCACGCGTGACGGCCCGTTGTGGATCATCTTTGCTCGAAGCATGTTCATCACCCTCCAACAGGAGCTCATCATGAACAGCAACAAGACCATTGATGGAAGAGGTGTCGATGTTTACATTGCCAAGGGTGCTGGCATCACGGTGCAGTTTGTGAAGAACATCATCATCCATGGGATCAAGGTCTTTGACATCGTGATTCGTGAGGGTGGGATGATCAGAGATTCTGAGACACATTATGGTTTCAGGACTAAGAGTGATGGTGATGGCATTTCCATCTTTGGTAGCAGCAATGTTTGGATTGACCATGTTTCCATGAGAAATTGTAGTGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGTTATTCTGATGATAAGATCATGCAAATCACCTTGGCATTCAACCACTTCGGCAAAAGATTAGTTCAAAGGATGCCCAGAGTTCGATATGGTTTTGTCCATTCGGTAAATAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCAAGAACCCCACCATTATCAGTGAGGGTAACCGTTTTATTGCCCCTGACAACCAATTCGCTAAACAGATTACAAAGAGGGAATACGCACCAGAAAACGTATGGGCAAATTGGCAGTGGAGATCAATTAACGATGTGTACATGAATGGAGCATTTTTTGTGCAATCTGGGCCTGAGCTGGCTAGCAGACCATTCTCAAGAGAAGACATGATCACCGCTAAGGTAGGAAATTATGTAGGAAGGCTTACACGCTATTCTGGCAACCTGTTGAAGTGCAGAGTGGGTCGCCCTTGTTAA 1356 0.4624 MANCQQYYFLLLSLAIFIPTLNANSLEKDEYWQSHVYEFDSYWQERAKAAKVDSQAAYFEDPYSVSSNFTSSVSELTIGKKDLRRNLKGKYRGDGPCIATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDDDMVNPKPGTLRHAVTRDGPLWIIFARSMFITLQQELIMNSNKTIDGRGVDVYIAKGAGITVQFVKNIIIHGIKVFDIVIREGGMIRDSETHYGFRTKSDGDGISIFGSSNVWIDHVSMRNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYSDDKIMQITLAFNHFGKRLVQRMPRVRYGFVHSVNNDYTHWEMYAIGGSKNPTIISEGNRFIAPDNQFAKQITKREYAPENVWANWQWRSINDVYMNGAFFVQSGPELASRPFSREDMITAKVGNYVGRLTRYSGNLLKCRVGRPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02790 451 Pfam Pectate lyase 185 366 IPR002022 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Gma08g02790 451 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Gma08g02790 451 PANTHER PECTATE LYASE 3 451 - -
Gma08g02790 451 Pfam Pectate lyase, N terminus 35 87 IPR007524 GO:0030570
Gma08g02790 451 Gene3D - 100 443 IPR012334 -
Gma08g02790 451 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
Gma08g02790 451 SMART amb_all 175 372 IPR002022 -
Gma08g02790 451 PANTHER PECTATE LYASE 18-RELATED 3 451 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02790 Gma-Chr8 43865484 43869134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02790 3 451 Polysaccharide Lyase AT1G14420 58.280 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02790 K01728 - gmx:100798579 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02790 08 43865484 43869134 Gma08g02790 08 43865484 43869134 ECH
Gma08g02790 08 43865484 43869134 Gma04g01682 04 45839753 45842428 ECH
Gma08g02790 08 43865484 43869134 Gma19g00177 19 2144695 2146579 ECH