Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02759 ATGATTAAAATTGTAGATGTTAGAGGATACTGGGATGAAAAAAATTGGGAGAATTCAAATTTCCTTCAACAATCACGGACCACCGACGGAATTAATCTCTCACCTAATGGATTTAGACGGATTAACATTTTGAAATTGACTGTGTTCAATTCAAAGTTTCAAACCATTTTTCATCTTTGCCAACCTTTAGTGAACGGAAGAGGTGCTAAGAAACAAAGGCCAATGACAGATAGTGCCTTAGCATATCTCACCACAGTCAAGGATGCATTTAAAGATGATAGAGAAAAATATGATAAATTTCTGGAACTCGTGAAAAATTTCACTGCTGAAAGATTCAACCTTGTTAGAGGCATAGAAGAAGTGAAGGAGCTGCTTAAAGGGTATAGAGATCTAATCTTGGGATTTAATGTTTTCTTGCCAAAGGGATATGAAATCAAACTTCCATTGGAGGATGAACAACCTCCAGAAAAGAAGCTTGATGTGTTTGTTAAAGCTAAAAAACTTCTGCACAAGATTAAGGCTCGATTCCATGGTCAAGATAATGTTTACAAGACATTTCTGGCCATATTAAAGATGCACAAAGATGGAACCAAGTCTCCCACTGCAGCTTACGGGGAGATTACTGCACTTCTTCAGCACCATGCGGATCTTCTTAATGAGTTACCTTTTTTATCTCTTAATACTTCAAGAACTATCTCAATTCATTTTACTTCTGCACAAAATTCTTTGTTTCGTGAAAAAAGCTCTGCAGTTCCAATAGTGCAACAAATGTGTGTTCTGAAGAGAAAAAGGACCAAAACTTCACATGATGATCACAACCACATTGTTGGTCATAGATTAGAGAGCGATTGGAGTGAACGGGAAAAGGATAATAGAGATTATTATCAAGATGGTATTCAGAAGCTTCTATCTCTGAAACGGACACATTTTTGTATGGCTGAAGACCTTATGGCTAGATCATTTTGTAATGTTGATAAACATTTTGGTATGCACCCCATGCCATCCACTTGTTATGATCAAAGTTCTATGAAAAGTAGTGAAAGGTTTTCTTTCTGTGCAAAAATCAAGGATAAATTACAAAATCCTAAGAATTACTTTTCAAAGCATGTGGATATCTACAGCAAGGAAAAAACTACTCGACAAGAATTGCCATCATCAACAACTGATTTCCCAAGAAAATTCCCAGATCTCATGAAGGGATTTAATGAATGTGTAACCCAATGTAAGAAGATGAATGAATCCTCGAGGGATGAAGAACATGTGCAGAAACAAATAAAGTTGGAAGACTGGAACAGAGATCGACATCATGATGGTGATGATCGGGTGAAAGAAACAGTTAGTGATTGCCGGAAAAGGGACAAATCTACTGTAGTTGCCAACAAGAATGTTTCTGGTCGTAAGTTGTCTCTATATGCCAGCAAGAAGAAGAATTCTGCAAAATCTGTTAGAGAGCTGGATCTATCTATCTGTGAAAAGTGCACTCCCAGTTACTATCTTCTACCAAAAGAATTTCAAATCCCATCTTCTAGCCGGAGAACAAAACTTGATGCAGAAGTATTGAATGACCATTGGAAATGTGTTGCTCCAAGTATTAAGGATTATTCTTCTAAACACATGAGCAAAAATCTTAATGAAATGACCTTGTTTGAATGTGAAGATGATAGGATTGAACTTGACATGTGTTTAGAAACTGCAAAGTCAACAACTAAGCAAGTTGAAGAGCTCATAGAAAAGATCAATACCAATATGATTGAAAGAGACAATCCAATTAACATTGAGAAGCACTTAATAGCTCAAAATCTTAGGTGCATTGAGCAGTTATATGGCGACCATGGGATTGATGTGCTGGATGTGTTAAGGAAGAATGCATCTCAAGTTTTGCCAGTCATTTTAACTAGGTTGAAGCAGAAACATGAAGAATGGGCAAGATGTCGTGCTGATTTAAATAAACTTTGGGCTGAAGTATATGCTAAAAACTATCATAAATCACTTAATCATGATCGTGTTCCTTCTACTAGGAACCAAGAGCTTTAG 2034 0.3653 MIKIVDVRGYWDEKNWENSNFLQQSRTTDGINLSPNGFRRINILKLTVFNSKFQTIFHLCQPLVNGRGAKKQRPMTDSALAYLTTVKDAFKDDREKYDKFLELVKNFTAERFNLVRGIEEVKELLKGYRDLILGFNVFLPKGYEIKLPLEDEQPPEKKLDVFVKAKKLLHKIKARFHGQDNVYKTFLAILKMHKDGTKSPTAAYGEITALLQHHADLLNELPFLSLNTSRTISIHFTSAQNSLFREKSSAVPIVQQMCVLKRKRTKTSHDDHNHIVGHRLESDWSEREKDNRDYYQDGIQKLLSLKRTHFCMAEDLMARSFCNVDKHFGMHPMPSTCYDQSSMKSSERFSFCAKIKDKLQNPKNYFSKHVDIYSKEKTTRQELPSSTTDFPRKFPDLMKGFNECVTQCKKMNESSRDEEHVQKQIKLEDWNRDRHHDGDDRVKETVSDCRKRDKSTVVANKNVSGRKLSLYASKKKNSAKSVRELDLSICEKCTPSYYLLPKEFQIPSSSRRTKLDAEVLNDHWKCVAPSIKDYSSKHMSKNLNEMTLFECEDDRIELDMCLETAKSTTKQVEELIEKINTNMIERDNPINIEKHLIAQNLRCIEQLYGDHGIDVLDVLRKNASQVLPVILTRLKQKHEEWARCRADLNKLWAEVYAKNYHKSLNHDRVPSTRNQEL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02759 677 SMART hdac_interact2seq4b 489 589 IPR013194 -
Gma08g02759 677 Pfam Paired amphipathic helix repeat 95 139 IPR003822 GO:0006355
Gma08g02759 677 PANTHER SIN3A, ISOFORM G 67 671 - -
Gma08g02759 677 PANTHER SIN3B-RELATED 67 671 IPR039774 GO:0003714
Gma08g02759 677 Gene3D Paired amphipathic helix 339 409 IPR036600 GO:0006355
Gma08g02759 677 Gene3D Paired amphipathic helix 78 140 IPR036600 GO:0006355
Gma08g02759 677 SUPERFAMILY PAH2 domain 70 141 IPR036600 GO:0006355
Gma08g02759 677 SUPERFAMILY PAH2 domain 164 221 IPR036600 GO:0006355
Gma08g02759 677 Coils Coil 562 582 - -
Gma08g02759 677 Gene3D Paired amphipathic helix 165 224 IPR036600 GO:0006355
Gma08g02759 677 ProSiteProfiles PAH domain profile. 73 142 IPR003822 GO:0006355
Gma08g02759 677 ProSiteProfiles PAH domain profile. 157 228 IPR003822 GO:0006355
Gma08g02759 677 Pfam Sin3 family co-repressor 491 583 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02759 Gma-Chr8 43359394 43364859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02759 14 154 WRKY Transcription Factor Family AT4G12020 32.639 3.38e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma08g02759 Sin3_corepress 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02759 K11644 - gmx:100782878 1227.62