Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02756 ATGCTCCACTACATCATAATTGCAGTAGTTCACCTCCATCTTCATGAGCTTCTCAATAGGAGTGCTCAAATCTATGAAAGTTTGTGGAAAGGATTTGGCTCTTACGAGGGCGATCTGTGTGCAATTTTGGGGCTGGAAATCTTGCTCGCGTTTCATGCTTTTGTGAATTTCCCTGCGTTATTGTTAGGAATGAAGAGGTCAAGGGATGATGTTTACATGAGTTCACAACTGAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCAcagatgacgagtggcggtgctcagaaactaaccacagatgatgccttggcatatctcaaggcagtaaaggacatgtttcaagataagagggaaaagtatgatgactttctggaagtcatgaaggatttcaaggctcaaagaattgatacatcaggtgtcattgcaagagtgaaggaactgtttaaagggcacaaagatctaattttgggatttaacaccttcttgccaaagggatatgaaattacacttccattggaggatgaACAACCTCCCCAAAAGAAGCCCGTTGAATTTGCAGAAGCCATAAATTTTGTGGGCAAGATTAAGgctcgttttcatgacaatgaccgtgtttataagtcatttctagacatattaaatatgtacagaagggaagccaagtctattgctgaggtttacaaggaggttgctgcacttttccaggaccatgtggatcttcttagggagtttactcattttcttccTGATACTTCAGGAACAGCCTCTAATCACTGTGGTTTGGCTCGAAATTCTCTCCTTCCCGATAGGAGCTCTGCTATGCCAATAATTAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATAGCTTCACATGGTGATCGTGACCTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGATTAGGGCCGATAAGGATCAGAGGAGGCATGATGAGAAGGAAAAGGGCAGTAGAGATTATGATCATGATGGTATATCTCGCAAGCGGAAATCTGGTATTAGGGCTGAAGACTCTGGTGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCCTATCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGCTTGGTTACCTTGACAAAGTGAAGGAGAAATTAAGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACATGAGTTGCAATCATTGGTGGGCAATTTACTGGGAAAACATGCAGATCTTATGGAGGGATTTGATGAATTTTTGGTTCAATGTGAGAAGAACGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAGACACGGACCAAAACCAGTGAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGAAAGAAAGGGACCGCGAATGCCGAGAAAGGGACAAATCCAATGCAATTGCTAACAAGGATGTTTTGGTTCCTAAGACATCTCTGTACGCCGGCAAGGATAAGTATGCAGCGAAACCTATAAGTGAGCTTGATCTTTCGAACTGTGAACAATGCACTCCCAGTTACTGTCTTCTACCGAAAAATTACCCAATACCACCAGCTAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCATTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTATTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAGCTCTTAGAAAAGGTTAATGCTAATATAATTAAAGGAGATAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTACTTGCAGAAATAAAAGAAATTAGTGAGAAGAAAAGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCCTCACTTGGAATTTGTGTATCCTGATTCGGAGATTCATGAAGATTTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCAATGAAGATTTGGACAACATTTTTAGAACCTATGCTTGGTGTTCCTTCTCGACCCCAAGGTCCAGTAGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTGCCAAAACTGGCACTGGAATTGATGATGGGGATAGTAGTCCTGCAACAAATCCTAAGAATTTAAACACTAATAGAAATGGGGATGAGAACTTTCCATCAGAACAATCAAATTCCTGCAAACAATGGCAAACAAGTGGGGATAATAAGGTTAAAGAAGATAATCATCTTGATTTGGAACGCTCGGCACATAAGAATGAAACCTTGGGAAGTAGTACACAGCATGGTAAAGTGCATATAAATGCATCCACGACTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGTCTCATTGACCTTGGGTATGGAGCTAATTAGTAGAAGAACAAATGTGGATAATGCATCAGGACTTACTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGAGGGAGGACTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCATCAATGAGGACACTAAAGTTCACAGATATCATGAAGAAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGTGGAGACTTTGAAGAGGATAACTGTGAAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAGATGGTACCATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTCGTGGTGAAGCTGGAGGAGAAAATGATGCTGATGACGAAGGCGAAGAAAGTCCCCATAGATCAATGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACTGAGTCTGCCGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGAATGGAGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGACTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCTCCAGTGTTGCATGACAAACAAAGGACTGTTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAACTCATCATCTGCTGAAAAGAAGTGGAGGGCTTCTAATGATACAGGCTCTAGTGATCAATATGGCAGGTTTATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGAGTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAGGTTGTTGCCACCGAAGAGATGGATAACAAGCTGCTTCAACTATATACATATGAAAATTCAAGAAAACCTGGAAGATTCGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATGTTCTCCTGCACCTACCCAATTGTCGTCTATTCAACTGATGGACTATGGATATGATAAGCCTGAAATGACTGCAGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCGGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCCATTAGTGATGAATATTCAAGCCAGACCTTGGATGGACTACAAATTATCAATGGTCTAGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATACGTTTTAGATACTGAAGATTTTTTACATCAAACAAGAAGAAAAAGGAGAACCTTGTATCAGAGCAATGGTATTCATTTTGAGCCCGAGATGTGTTTTTGGTCATGCATCAATGGCAGGCAGAGCACGGCGAAGTTCGCTAGTGGCAGCCACCACCACTCCCTCTCGTCACGCTTCGAGGACTACAGGGAGATTTTTGCTTGGATTTTTCGGCACTCGACACCACCAGTGAGGTTTTCTTTGACTCCCGAAATGTTGCCTGTGACAACTCCGAAATCTTCCACGACTTCGACGGCCTCAACTTTTGACTCTCTTACAATGACTTGTTTCGCAGCAGCATTTCCGAAGAAGACGATGATGAAGAAGAAAAAGAAGCCTAATATGAATGAATGCAGTCGTGGTCTTAATGTTTGCACTTTTTTACCGTTTGGTTATGAATATTTGATTACTGCATGA 4686 0.3726 MLHYIIIAVVHLHLHELLNRSAQIYESLWKGFGSYEGDLCAILGLEILLAFHAFVNFPALLLGMKRSRDDVYMSSQLKRPMVSSRGEPSGQPQMTSGGAQKLTTDDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKARFHDNDRVYKSFLDILNMYRREAKSIAEVYKEVAALFQDHVDLLREFTHFLPDTSGTASNHCGLARNSLLPDRSSAMPIIRQMHVEKRERNIASHGDRDLSADHPDPELDRCLIRADKDQRRHDEKEKGSRDYDHDGISRKRKSGIRAEDSGAEPLHDTDENFGMHPISYACEDKSSLKSMYSPVLGYLDKVKEKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKHADLMEGFDEFLVQCEKNEGFLAGLLKKRHGPKPVKVEDRDRDRDRDDGMKERDRECRERDKSNAIANKDVLVPKTSLYAGKDKYAAKPISELDLSNCEQCTPSYCLLPKNYPIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKVNANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDSEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPVDTEDVVKANKNNSAKTGTGIDDGDSSPATNPKNLNTNRNGDENFPSEQSNSCKQWQTSGDNKVKEDNHLDLERSAHKNETLGSSTQHGKVHINASTTDEVSRANKQDHSIERLVNANVSLTLGMELISRRTNVDNASGLTATPSRPGNISGEGGLGLPSLEGADSTRPVTSTNGAINEDTKVHRYHEEVGHFKSEREEGELSPNGGDFEEDNCEVYGHAGLEAVHKGKDGTICRQYQNRHGEEVRGEAGGENDADDEGEESPHRSMEDSENASENGDVSGTESADGEECSREHEENGDHEHDNKAESEGEAEGMTDANDVEGDGASLPYSERFLVTVKPLAKHVPPVLHDKQRTVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSSDQYGRFMDALYNLLDGSSDSTKFEDECRAIIGTQSYVLFTLDKLIYKLVKQLQVVATEEMDNKLLQLYTYENSRKPGRFVDLVYHENARVLLHDENIYRIECSPAPTQLSSIQLMDYGYDKPEMTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRKYAISDEYSSQTLDGLQIINGLECKIACSSSKVSYVLDTEDFLHQTRRKRRTLYQSNGIHFEPEMCFWSCINGRQSTAKFASGSHHHSLSSRFEDYREIFAWIFRHSTPPVRFSLTPEMLPVTTPKSSTTSTASTFDSLTMTCFAAAFPKKTMMKKKKKPNMNECSRGLNVCTFLPFGYEYLITA 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02756 1561 MobiDBLite consensus disorder prediction 466 494 - -
Gma08g02756 1561 Pfam C-terminal domain of Sin3a protein 1172 1419 IPR031693 -
Gma08g02756 1561 MobiDBLite consensus disorder prediction 823 876 - -
Gma08g02756 1561 MobiDBLite consensus disorder prediction 80 99 - -
Gma08g02756 1561 Gene3D Paired amphipathic helix 184 257 IPR036600 GO:0006355
Gma08g02756 1561 MobiDBLite consensus disorder prediction 892 914 - -
Gma08g02756 1561 ProSiteProfiles PAH domain profile. 100 170 IPR003822 GO:0006355
Gma08g02756 1561 MobiDBLite consensus disorder prediction 891 920 - -
Gma08g02756 1561 Gene3D Paired amphipathic helix 379 451 IPR036600 GO:0006355
Gma08g02756 1561 SUPERFAMILY PAH2 domain 182 255 IPR036600 GO:0006355
Gma08g02756 1561 Pfam Paired amphipathic helix repeat 402 446 IPR003822 GO:0006355
Gma08g02756 1561 Pfam Paired amphipathic helix repeat 210 253 IPR003822 GO:0006355
Gma08g02756 1561 Pfam Paired amphipathic helix repeat 123 167 IPR003822 GO:0006355
Gma08g02756 1561 MobiDBLite consensus disorder prediction 1098 1125 - -
Gma08g02756 1561 ProSiteProfiles PAH domain profile. 186 256 IPR003822 GO:0006355
Gma08g02756 1561 Coils Coil 600 620 - -
Gma08g02756 1561 MobiDBLite consensus disorder prediction 1071 1085 - -
Gma08g02756 1561 SMART hdac_interact2seq4b 531 631 IPR013194 -
Gma08g02756 1561 MobiDBLite consensus disorder prediction 1054 1139 - -
Gma08g02756 1561 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Gma08g02756 1561 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 64 1429 - -
Gma08g02756 1561 PANTHER SIN3B-RELATED 64 1429 IPR039774 GO:0003714
Gma08g02756 1561 MobiDBLite consensus disorder prediction 296 362 - -
Gma08g02756 1561 SUPERFAMILY PAH2 domain 100 169 IPR036600 GO:0006355
Gma08g02756 1561 ProSiteProfiles PAH domain profile. 380 449 IPR003822 GO:0006355
Gma08g02756 1561 MobiDBLite consensus disorder prediction 823 872 - -
Gma08g02756 1561 Pfam Sin3 family co-repressor 533 623 IPR013194 -
Gma08g02756 1561 SUPERFAMILY PAH2 domain 384 449 IPR036600 GO:0006355
Gma08g02756 1561 MobiDBLite consensus disorder prediction 949 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02756 Gma-Chr8 43291028 43310365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02756 91 182 WRKY Transcription Factor Family AT4G12020 60.638 4.92e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma08g02756 Sin3a_C 4.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02756 K11644 - gmx:100781798 2711.02