Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02713 ATGTCTCGTGTTTATGTTGGGAATTTAGACCCTCGAGTCAGTGAGAGGGACCTCGAAGATGAATTTCGTATATATGGTGTTCTTAGGAGTGTCTGGGTTGCTCGAAGACCACCGGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCACTTGATGCAATTCAGGCCTTGGATGGAAAAAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGCCGAGGAGGGCGTGGGCGTGGAGGTGAAgacacaaaatgctatgaatgtggtgaacctggacactttgctcgggagtgcCGATTGCGCATTGGATCACGTGGCCTTGGAAGTGGAAGGAGGCGAAGTCCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGTGATTCACCTTATGCCAATGCAGATTAA 531 0.452 MSRVYVGNLDPRVSERDLEDEFRIYGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGRGGRGRGGEDTKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYDRSSYSPRGRRSPRRRSISPPWGRNYSRSPPYRPRRDSPYANAD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02713 176 SUPERFAMILY RNA-binding domain, RBD 3 82 IPR035979 GO:0003676
Gma08g02713 176 Gene3D - 76 149 - -
Gma08g02713 176 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 174 - -
Gma08g02713 176 SUPERFAMILY Retrovirus zinc finger-like domains 78 105 IPR036875 GO:0003676|GO:0008270
Gma08g02713 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Gma08g02713 176 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 174 - -
Gma08g02713 176 MobiDBLite consensus disorder prediction 109 176 - -
Gma08g02713 176 Gene3D - 2 69 IPR012677 -
Gma08g02713 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gma08g02713 176 CDD RRM_SRSF3_like 3 71 - -
Gma08g02713 176 SMART rrm1_1 3 69 IPR000504 GO:0003723
Gma08g02713 176 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Gma08g02713 176 MobiDBLite consensus disorder prediction 68 88 - -
Gma08g02713 176 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Gma08g02713 176 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02713 Gma-Chr8 42574366 42576110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02713 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 1.21e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02713 K12896 - gmx:100813882 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02713 08 42574366 42576110 Gma08g02713 08 42574366 42576110 ECH