Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02687 ATGGGAGATTCTGATCAACTCTCCAAATCTGCCAAAAACCAGAAAACTGAACAAGATAATGAGGAGGACTCAAACAAGGAGAGCTCTCTGTTGCATATTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGGTCTTCAAAAAGCTCTGCATCTGCTGAACCAATTGAAGAATCTGGGAAACCAGTGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGGTAGCAAAGCAACAGCAACTCTAGAGACCGAGACTGAGTTTTCCAAAGATGCCCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGCAGGGAGTTTGAAAGGGAAAAGTGCAAGTTCTGAGGATGAAAAATTATATAAGGGAATCAACAATTACAAAGATTACAAGGCTGGCTTTCGTAGGGAGCAAGCAATTGCTAGTGAAAAAGCTGGTGGGTCACATGGTCCTCTTTGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTGCTGTGGATACCATGATTCATGCAAGTTTATGCATGATCAAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGTTGAGAAAGCAAGGAAGATGAAATTGGCTGCAGGTGAGGATGCGGATGAGGAGGAGGGTGCTAATTTGACTGATGAAGATGAAGATGGTTCATTACCATTTGCATGTTTCATTTGTAGAAATCCTTTTGTGGATCCTGTTGTAACCAAATGCAAGCGCTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCTAAGAATAAGAAGATCCATGAATCTCTTTGCTTTATGTTGAGATTGTGGAGCCTGTGCTTTCGACTTCACCGTTCTGTTCTGCTCGTGGCTGGAATCGTTGGATTGTACACTTTTGTTGTTTGTAAGGAGACCGTTCAAAGCCTTTAA 978 0.4213 MGDSDQLSKSAKNQKTEQDNEEDSNKESSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPIEESGKPVFQFESSKEIQVQHGSKATATLETETEFSKDARAIRERALKQAAGSLKGKSASSEDEKLYKGINNYKDYKAGFRREQAIASEKAGGSHGPLWASAHIRVSARFDYQPDICKDYKETGCCGYHDSCKFMHDQGDYKSGWQMEKEWEEVEKARKMKLAAGEDADEEEGANLTDEDEDGSLPFACFICRNPFVDPVVTKCKRYFCEHCALKHHAKNKKIHESLCFMLRLWSLCFRLHRSVLLVAGIVGLYTFVVCKETVQSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02687 325 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 197 IPR000571 GO:0046872
Gma08g02687 325 SUPERFAMILY RING/U-box 247 282 - -
Gma08g02687 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 292 IPR013083 -
Gma08g02687 325 ProSiteProfiles Zinc finger C3H1-type profile. 170 198 IPR000571 GO:0046872
Gma08g02687 325 SMART c3hfinal6 170 197 IPR000571 GO:0046872
Gma08g02687 325 MobiDBLite consensus disorder prediction 10 39 - -
Gma08g02687 325 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 295 - -
Gma08g02687 325 MobiDBLite consensus disorder prediction 1 65 - -
Gma08g02687 325 SUPERFAMILY CCCH zinc finger 169 201 IPR036855 GO:0046872
Gma08g02687 325 CDD RING-HC_RNF113A_B 246 281 - -
Gma08g02687 325 PANTHER ZINC FINGER PROTEIN 183 10 295 IPR039971 -
Gma08g02687 325 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02687 Gma-Chr8 42089224 42091157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02687 8 289 C2H2 Transcription Factor Family AT1G01350 66.084 9.07e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma08g02687 zf-CCCH 0.00026 CL0537