Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02652 ATGGGTCGTCGTAAGATTGAAATTGCGGAGGTGAAAGACCCTAATACGAGGCAAGTCACATTTTCCAAGCGTCGATCAGGCTTATTCAAAAAGGCAAATGAATTGTCCATCTTGTGCGGAGTAGAAATTGCTATGGTTGTGTTCTCTATTGGAAACAAACCTTATTCTTTTGGGCACCCAAGTGTTGATGTTGTTGCAACCAAGTTTCTTCAACAAGCGACAACCAATTCAAATGATGATGCACAGGGAAAAAATAACAACAACCCTAATTCGAATGAAGTTGTTGATGGTGACAACATGGAAAGGTTGAATCAACAATTGTCTAATCTTCAGGCCCAAATACTAGAGGAAGAAAAGAAGGGTGCGAGGCATGATGAGAGACTAAAACAACATGAAGTGACACAAGTCTCTCAATATGCAGAATTGCAAGGTTCTTGTTTAGAGCTCCAACGTAAGGTGAAGGACAATGTTGACGCAATCGAGGTATCAGAGTGTATGTTGCTTCTTGCAAAAGAACCCGTAGTCGGAGTAAGAAAACAAATGACTACGAAGAAAAGAAGAAAGAATTGA 570 0.4018 MGRRKIEIAEVKDPNTRQVTFSKRRSGLFKKANELSILCGVEIAMVVFSIGNKPYSFGHPSVDVVATKFLQQATTNSNDDAQGKNNNNPNSNEVVDGDNMERLNQQLSNLQAQILEEEKKGARHDERLKQHEVTQVSQYAELQGSCLELQRKVKDNVDAIEVSECMLLLAKEPVVGVRKQMTTKKRRKN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02652 189 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma08g02652 189 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Gma08g02652 189 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Gma08g02652 189 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma08g02652 189 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma08g02652 189 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma08g02652 189 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 180 - -
Gma08g02652 189 Coils Coil 100 120 - -
Gma08g02652 189 MobiDBLite consensus disorder prediction 76 96 - -
Gma08g02652 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gma08g02652 189 PANTHER MADS BOX PROTEIN 2 180 - -
Gma08g02652 189 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02652 Gma-Chr8 41246968 41247537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02652 1 171 Type I MADS-box Gene Family AT2G34440 35.556 1.36e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma08g02652 SRF-TF 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02652 - - gmx:100789068 367.851