Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02620 ATGGAAAAGAAGATGGAGAGATTAGAGAGGAGGAGCAAGAAGGAGGAAGTGAAAGAAAAGAAAAAGAGCCGAAAGTTTGAGTTAACGTTGATGTTGGGTGGCCAGAACCAAAAGAAAGAGGTGGTTGACGACGACGACGTATCGGTATCGCCGAGGGATGTGTTTGGGGTTCCTATTTTAGGGATGGATTCAGATAGCACGGGGAGCAGCAACTACGGCGGGCCGGGGTCGCCAGGCCTTGGCCAGAAGCATAGCCAGCAGTGGAGGGCGATGATCGATGTTTTGAGGTTCAAGTCCGTTAGGAGATTCTCAACGATCCCGTTGCTTGCAGCGAGCTACGAGATCTCGAGGAAGAGCCTAAGGAACAAGCTGGCGCGTATTCTACCCGCGAATGAAGAAGACGATGATTTGAATCTTGGAATTGACATTGATGACATTTCCACCAAGCCTTCTTGGAGGAACTTCAGTTATGCTGACCTTGCCGCTGCCACAGACGATTTCAGCCCTGTGAACTTGCTTGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTAGCAGATGGTCAAGTCGTAGCCGTAAAGAGGCTAATGAGGAATGAAAAAGAAATTGAGGGCAAAGCTGGTGATTTCTTGACAGAGCTTGGAATCATTGCTCACATTAACCATCCCAATGCAACACGCTTGATTGGGTTTGGGATCGACAATGGTCTCTACTTTGTTCTACAATTGGCCCCACATGGCAGCCTTTCCTCTTTGCTCTTTGGTTCTGAATGTTTAGAGTGGAAGATAAGGTTTAAAGTAGCTGTTGGGGTGGCAAAAGGGTTGCAGTATCTCCACCACGATTGCCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAATATTTTACTCAACCAAAATAATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCCCACCATGTTGTCTTCCCAATTGAAGGCACATTTGGGTATTTGGCTCCAGAATACTTTATGCATGGAATTGTGGATGAGAAAACTGATGTTTTTGCATTTGGGGTTTTGTTACTGGAACTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTTGTGATCTGGGCCAAACCCCTGCTGGAAGCAAAGTTGATCGAACAAATGGTAGACCCCAGATTAGAACTGAAATATGATCTGGCAGAAATGAAGTGTGCCATGGTAACGGCTTCCATGTGTATCCATCACATGTCCTCTAAGCGACCATACATGAATCAGGTTGTGCAGTTACTGAAAGGGGAAGAGGTGCCTATTGAACTCACACAAAATTCATCAGCTCCAAGATCACACTTGATAGATGCATGTGACTTGGAAGATTATACTTGCTCTAATTATTTGACTGACCTCAATCGCCACAAGCAATTACTCATGGAGTGA 1446 0.4544 MEKKMERLERRSKKEEVKEKKKSRKFELTLMLGGQNQKKEVVDDDDVSVSPRDVFGVPILGMDSDSTGSSNYGGPGSPGLGQKHSQQWRAMIDVLRFKSVRRFSTIPLLAASYEISRKSLRNKLARILPANEEDDDLNLGIDIDDISTKPSWRNFSYADLAAATDDFSPVNLLGKGGHAEVYKGCLADGQVVAVKRLMRNEKEIEGKAGDFLTELGIIAHINHPNATRLIGFGIDNGLYFVLQLAPHGSLSSLLFGSECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNQNNEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLEAKLIEQMVDPRLELKYDLAEMKCAMVTASMCIHHMSSKRPYMNQVVQLLKGEEVPIELTQNSSAPRSHLIDACDLEDYTCSNYLTDLNRHKQLLME 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02620 481 Coils Coil 5 25 - -
Gma08g02620 481 MobiDBLite consensus disorder prediction 63 83 - -
Gma08g02620 481 ProSiteProfiles Protein kinase domain profile. 167 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02620 481 ProSitePatterns Protein kinases ATP-binding region signature. 173 195 IPR017441 GO:0005524
Gma08g02620 481 Gene3D Phosphorylase Kinase; domain 1 141 242 - -
Gma08g02620 481 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 5 481 - -
Gma08g02620 481 SMART serkin_6 167 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02620 481 PANTHER OS08G0249100 PROTEIN 5 481 - -
Gma08g02620 481 MobiDBLite consensus disorder prediction 60 83 - -
Gma08g02620 481 Gene3D Transferase(Phosphotransferase) domain 1 246 449 - -
Gma08g02620 481 SUPERFAMILY Protein kinase-like (PK-like) 150 443 IPR011009 -
Gma08g02620 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Gma08g02620 481 Pfam Protein kinase domain 170 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma08g02620 481 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02620 Gma-Chr8 40173437 40178116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02620 146 457 Trihelix Transcription Factor Family AT5G38560 42.154 2.09e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma08g02620 Pkinase 8.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02620 - - gmx:100812793 902.123