Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02593 ATGGCAACAGCACCAGCAACAAAAGACCAAGAACCCACACAAGGCCGAAAATTCACCACCACCACCACAACAACAACAACAACAACGAGACCAGCGCCAGAACAAGGTGTGAAGTGTCCACGATGCGATTCATCCAACACCAAGTTCTGTTACTACAACAACTACAGCCTCACCCAGCCTAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAACGGCGGAGCGTTGCGCAACGTCCCGATTGGCGGCGGCTGCAGGAAGAACAAAAGGGTCGTTGTCAAACCCTCTTCCTCCTCCTCCTCCTCGTTATCTTCATCACCAAGATTCTCTAACGAATTCAGCCTTCGTGGCCTCAACGTTCCGCCCTCCGTCGAATTCAACCTCGGCGCGCTGCCCTTCCCTGCCTCCTCGAGGCTCAACATTCCGACAACCTTAAACACAGGGTTGTTCAGCAACCAGTTCTCGTCATCTCCGTTGTCTTTCGGAGGCGACGTTAACTCGGTCTCGGTCACTAACAATGCTTTGTCAGGCTTTCAGCTTGACGCGACTCCTGCAACTGTCCTGTCAAATTCCTTGATGAGCCTTGCGTCCAACAACAACACTCAGAATAATAATAATTTCTGGGCGCTGCAGGATCGGTCGCAAGGCTCGACACTATTACTGTCTGATTCATTCAACAGTAGTGCAATGCAGTCTATGCAGCAATCTCTGAACGTTCATAGCAGTCTTGCTTCTTCGATTGAGTCACTGAGCTGCGTCAACCAGGACTTGCATCTGAAGATGCAGCAGCAGCGTTACGCCACAATGATGTTCGGTGGGGACAGCTACCACCACAAAGGTGGTGGTGGTGGTGGTGATGAAAACAACGGCGTTTCGTTTTCTCAAACGGCTAATAGGTTCGAGAATCAGAAGCAGTTGGTGGGGAACCCCGTTATGTTTCAGAACCTCGAGATTTCGAAGCCACCTGGCAGTTCCGTAACAGAAGATCCAAGTGGGGCTACAGTTACAACAACAGTAGCACCACCCACCGAATGGTTCTTTGGGAATTCTTCTTTTTCCTCAGCAGGTAATGGTAATGATGGTGCCAATAGCAACAACAACAACATTAACATCAACATTAACGATGCAAACAACAATTGGAGTGATGCCCTTGCTTGGGGAGATTTTCAGCAGCAGCAGCAGCAACAATACAGTGCTTTGCCCTAG 1209 0.4996 MATAPATKDQEPTQGRKFTTTTTTTTTTTRPAPEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKRVVVKPSSSSSSSLSSSPRFSNEFSLRGLNVPPSVEFNLGALPFPASSRLNIPTTLNTGLFSNQFSSSPLSFGGDVNSVSVTNNALSGFQLDATPATVLSNSLMSLASNNNTQNNNNFWALQDRSQGSTLLLSDSFNSSAMQSMQQSLNVHSSLASSIESLSCVNQDLHLKMQQQRYATMMFGGDSYHHKGGGGGGDENNGVSFSQTANRFENQKQLVGNPVMFQNLEISKPPGSSVTEDPSGATVTTTVAPPTEWFFGNSSFSSAGNGNDGANSNNNNINININDANNNWSDALAWGDFQQQQQQQYSALP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02593 402 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 390 IPR045174 GO:0003700|GO:0006355
Gma08g02593 402 PANTHER DOF ZINC FINGER PROTEIN DOF5.7 7 390 - -
Gma08g02593 402 Pfam Dof domain, zinc finger 36 91 IPR003851 GO:0003677|GO:0006355
Gma08g02593 402 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Gma08g02593 402 MobiDBLite consensus disorder prediction 1 38 - -
Gma08g02593 402 MobiDBLite consensus disorder prediction 1 33 - -
Gma08g02593 402 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Gma08g02593 402 Coils Coil 360 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02593 Gma-Chr8 39312806 39314014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02593 34 402 C2C2-Dof Transcription Factor Family AT5G65590 35.310 3.67e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma08g02593 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02593 - - gmx:102660774 643.654