Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02588 ATGCATTCTGAAGCTGAAGCACTAGAACATACGAAGAAAAGAGATACAGGCCATCAAAGTGTGTCATTGGAGAATAAGACAGGAGATTCAACTATGCTGAAGATAAGAGATTCAACTAAAGTTGTGATAAAACAAGACATGAAGGGAAGAAAGCATAAATATGGGTTTAACAACAATAAGCGTGAGAAGACAAAGAAGAAAAGGGCGGTGGATGATGAAACTGGCGACAAACATCAGCTGGATGAAGTCCTAAGGAGGCAAATTGAAACAAAAAACCGATGCCTCAATCAGAGAAAAATAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAACAGTATTGAGCTACCAAAGAGGCAAGAAAACTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGATTGTGATCGAACTGCTATTGGTGCTTTATTGGATAAACTAACGAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTAAGAAGGATGCTACTACTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTACAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATCGGTCAGGCCAAGCCAATTCATATTCTTGTTGAGGTTATACGAACCGGCTCTCCACGCAATCGAGAGAATGTTGTTGCTGTCTTGTGGTCACTATGCACCGGAGATCCACTGCAATTAAAACTAGCGAAAGAACATGGTGCAGAAGCAGCACTGCAAGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGTTGGAAGCATATTGGAACTCTTgcagcgaatggaaggggttgataatctgcagagttcatag 912 0.4013 MHSEAEALEHTKKRDTGHQSVSLENKTGDSTMLKIRDSTKVVIKQDMKGRKHKYGFNNNKREKTKKKRAVDDETGDKHQLDEVLRRQIETKNRCLNQRKITCPKTQQTLVHTALTPNYVLKSLIALWCESNSIELPKRQENCRTKKCGGSSLSDCDRTAIGALLDKLTSNDIEQQRAAAGKKDATTALIKLLCEGTPTDEALAIMAILASHHEGRVAIGQAKPIHILVEVIRTGSPRNRENVVAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKRKVGSILELLQRMEGVDNLQSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02588 303 Pfam U-box domain 92 132 IPR003613 GO:0004842|GO:0016567
Gma08g02588 303 MobiDBLite consensus disorder prediction 1 20 - -
Gma08g02588 303 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 95 180 - -
Gma08g02588 303 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 187 295 - -
Gma08g02588 303 PANTHER U BOX DOMAIN-CONTAINING 187 295 - -
Gma08g02588 303 Gene3D - 150 301 IPR011989 -
Gma08g02588 303 PANTHER U BOX DOMAIN-CONTAINING 95 180 - -
Gma08g02588 303 MobiDBLite consensus disorder prediction 1 31 - -
Gma08g02588 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 134 IPR013083 -
Gma08g02588 303 ProSiteProfiles U-box domain profile. 93 134 IPR003613 GO:0004842|GO:0016567
Gma08g02588 303 SUPERFAMILY ARM repeat 159 291 IPR016024 -
Gma08g02588 303 SUPERFAMILY RING/U-box 93 137 - -
Gma08g02588 303 MobiDBLite consensus disorder prediction 44 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02588 Gma-Chr8 39132937 39138159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02588 180 297 U-box Gene Family AT3G54850 50.000 3.41e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02588 - - gmx:100807047 365.155