Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02586 ATGATCTTAGGTGAAGCTGCTGATTTTGCATGTGGATTTGTATCGCACAACATGAAAAGTGTGGCTTCGACAAGGAAAAGTGGTCTGCTCCTATGGCTTTGCGGAATACATTTGTGCTTCTTGCTCGTTGGTTGCACTTCATTTAGGAGTTTAAGGGAGGTCAACGGTCCTGACTCAACATTTAATCATCCTGAAGTCAAAGTGTATGTAGAAAAAAATCAGGTCATAATGGAAAATGGCATCATTCGGGTCAGTTTGTCAAAACCGGAGGGCACTGTCCTAGGAATATCATACAATGGAATAGATAATGTGCTTGAACGTCGCAACAAATTTAATAATAGAGGGTATTTTGACATTGTCTGGAATGCACCGGGAAGCACTTCCAAACTTTGGGGAATCCAAGGGAGTAAATTTTCTGTTATAGAAGCAAGTGAGAACCAAGTAGAGGTTTCGTTTACAAGAACGTGGGACATGGACAGCTCAAGTCTCCCCTTAAACATAGACAAAAGGTATATTTTACGTAGAGGTAGTTCAGGATTATACATATACGCTATATTTGAGCATCCCAAAGATTTTCCTGCACTGGAGATAGATCACATTAGGATCGTTTTCAAGCTACAAAGGGACAGGTTCCACTACATGGCTATAGCAGATGATAGGCAACGAGTCATGCCAACGGCAGAAGATAGATCTAAAGGGAGACGCCTTGATTTTGATGAAGCAGTTCTAATAACCAACCCTAGTAATCCAGAACTTCAAGGAGAGGTTGATGACAAATACCAATATTCTTGTGAGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAATTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAAGCAAGGCCTCACTTCTCATGTCGGGCCAACCACACTCAATATACTTCATACCACTCATTACTCGGGGAAGGAGGTAACCATGGCATTAAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTGAACTCAGTTTCTAGTGGCCATGATTCACAAGCCCTATGGAGTGATGCTGTACAACAGCTGTCTGAGGAAATCAAAAGTTGGCCTTATGATTTCCCTAATTCAGAAGAATTTTTCCCAGCCAATAAACGAGGAAGGGTGGAAGGAAGATTACTAGTCCAAGACCGGTACATGTTCATGAATTATCTAATTCTATTTTATAAATTTTATAATGATAGAAAAGAGCTAATGTTCCTTATCTTTACCTCCAGGCACATTCAGGGAGGGAATTTTGTATATGGCGACAATGCTTATGTTGGTTTGGCTCTTCCGGGAGATGTGGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTTTGGACTGAAGCTGACAAAGTAGGTCAATTCACAATTGAAAATATTCTACCGGGGGACTATGATTTATATGCATGGGTTCCTGGCATTTTTGGGGACTATAAACATAACACTACTATAACCATCACACCAGGTTGTGTTATCCAATTGGGTTCACTAATATACCATCCACCAAGAAATGGACCTACCATATGGGAAATTGGCATTCCAGATCGCTCTGCTGCGGAGTTCTATGTTCCAGATCCTTATCCTAACCTCATCAACCGATTATACATTGGGAAACCAGCACACAAGTTTAGACAATACGGATTATGGCAGCGTTATACCGAGTTATACCCAAGTCAGGACCTCGTTTATAATGTTGATGTCAGTAATTATAGTAAAGATTGGTTTTATGCTCAGATTCCCAGGAACATAGGAAACAACACATTTAGCCCAACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGCACCTACACACTGCAACTTGCCTTGGCCTCAGCTACTCGTTCTAACTTGGTGGTTCGGCTCAATAACCCTGTGGCTCGTCCTCCACACTTCTCAACGGGATTAATAGGCCGAGACAATTCCGTAGCAAGACATGGCATCCATGGATTGCACAGGCCTTACAGCATTGAAGTACCAAGCTATCTATTGGTGGAAGGAACCAACACCATCTATTTGAGGCAATCAAAAGGTCTAAGTCCTTTCCTAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTAG 2169 0.4149 MILGEAADFACGFVSHNMKSVASTRKSGLLLWLCGIHLCFLLVGCTSFRSLREVNGPDSTFNHPEVKVYVEKNQVIMENGIIRVSLSKPEGTVLGISYNGIDNVLERRNKFNNRGYFDIVWNAPGSTSKLWGIQGSKFSVIEASENQVEVSFTRTWDMDSSSLPLNIDKRYILRRGSSGLYIYAIFEHPKDFPALEIDHIRIVFKLQRDRFHYMAIADDRQRVMPTAEDRSKGRRLDFDEAVLITNPSNPELQGEVDDKYQYSCENKDNKVHGWINLDSNSNESVGFWMITPSNEFRSGGPIKQGLTSHVGPTTLNILHTTHYSGKEVTMALKEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAVQQLSEEIKSWPYDFPNSEEFFPANKRGRVEGRLLVQDRYMFMNYLILFYKFYNDRKELMFLIFTSRHIQGGNFVYGDNAYVGLALPGDVGSWQRQSKGYQFWTEADKVGQFTIENILPGDYDLYAWVPGIFGDYKHNTTITITPGCVIQLGSLIYHPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLYIGKPAHKFRQYGLWQRYTELYPSQDLVYNVDVSNYSKDWFYAQIPRNIGNNTFSPTTWEIKFHLPFVIRGTYTLQLALASATRSNLVVRLNNPVARPPHFSTGLIGRDNSVARHGIHGLHRPYSIEVPSYLLVEGTNTIYLRQSKGLSPFLGVMYDYIRLERPET 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02586 722 CDD RGL4_M 391 519 IPR029413 -
Gma08g02586 722 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 69 721 - -
Gma08g02586 722 Pfam Polysaccharide lyase family 4, domain III 529 717 IPR029411 -
Gma08g02586 722 Pfam Polysaccharide lyase family 4, domain II 443 515 IPR029413 -
Gma08g02586 722 CDD RGL4_N 70 354 - -
Gma08g02586 722 SUPERFAMILY Galactose mutarotase-like 78 353 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma08g02586 722 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 69 721 - -
Gma08g02586 722 CDD RGL4_C 531 718 - -
Gma08g02586 722 Gene3D - 526 718 - -
Gma08g02586 722 SUPERFAMILY Starch-binding domain-like 458 517 IPR013784 GO:0030246
Gma08g02586 722 Gene3D - 442 516 - -
Gma08g02586 722 SUPERFAMILY Galactose-binding domain-like 526 718 IPR008979 -
Gma08g02586 722 Pfam Rhamnogalacturonate lyase family 59 256 IPR010325 -
Gma08g02586 722 Gene3D - 67 364 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02586 Gma-Chr8 39113713 39120232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02586 66 722 Polysaccharide Lyase AT1G09910 52.266 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02586 K18195 - gmx:100792575 1270.37