Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02571 ATGGAGCTTTCTCAACTTGGTTTCCTAGAAGAGTTGGTAGCTCCTAGAAGAGACTCATGGAATGCTTTGTCCACTGGATTCTGTGAGCTATTGTCTAATGGCTGTTGTTGGAGTTTTGACACTTTTCTTGAGAACCCAACATTTGGTGCATTTTCAGCTCCAAGATTTGACAGCCCTTACAGCAGTGAAGTATCAGCAGCATACCCTTTTGCTGCTGATGGGTTCACAATGCCATTGTCAGAGCTTGACCCTGGGAGTGATGAGCCGCCACCACCACCACCACTTCCACCATCATTGGAGGATGCAGAGATTGGCTTTCATGACAACAACAACAAGAAGAAGAACAACTTTGAAGAAACCAAGGTTGTGTGCAAAGTTGAGGAGAAAGACAGAGAGATTCCACTCTTCAAGATTGGCATGTGTGATGATGGAGAGAGAAAACCCAAGTCCAAGAAGCTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGATCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGATAGGACCTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGGTACAAGTCAGATAAATCTTTTGGGCATTTCAAGGGAACAACTCAAGCCTAATGAAGCAATATTTGATGTTGAGAGGAGAGACCAGGACACCAGGATCAGCATCTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACTGTGAATACCTTAGAAGCAATAGGCCTTGAGATTCAGCAATGTGTTGTAAGTAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGCTGAACAGAGAGATTGCATTCATCCTGAAGAGATAAAACAAGCATTATTCAGAAATGCAGGCTTTGGTGAGAAATGTCTCTAG 963 0.4393 MELSQLGFLEELVAPRRDSWNALSTGFCELLSNGCCWSFDTFLENPTFGAFSAPRFDSPYSSEVSAAYPFAADGFTMPLSELDPGSDEPPPPPPLPPSLEDAEIGFHDNNNKKKNNFEETKVVCKVEEKDREIPLFKIGMCDDGERKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGTSQINLLGISREQLKPNEAIFDVERRDQDTRISICCATKPGLLLSTVNTLEAIGLEIQQCVVSSFNDFSVEASCSEVAEQRDCIHPEEIKQALFRNAGFGEKCL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02571 320 Pfam Helix-loop-helix DNA-binding domain 161 204 IPR011598 GO:0046983
Gma08g02571 320 MobiDBLite consensus disorder prediction 78 99 - -
Gma08g02571 320 MobiDBLite consensus disorder prediction 84 99 - -
Gma08g02571 320 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 320 - -
Gma08g02571 320 Gene3D - 163 235 IPR036638 GO:0046983
Gma08g02571 320 SMART finulus 161 210 IPR011598 GO:0046983
Gma08g02571 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 220 IPR036638 GO:0046983
Gma08g02571 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Gma08g02571 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02571 Gma-Chr8 38658043 38659693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02571 52 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 50.909 9.07e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g02571 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02571 - - gmx:100790319 619.002