Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02567 ATGTCTTCTCATGGCTGTAACATTCACTTTTCCAAGAGGATTGAGGAAGATACCATTCGAAAGGGGGAGTTGAGGATTCCTCGAAGTTTTGTGAATAAATGTTGGGAAGGAATGTCAAACCCAACACTCCTTCTGCTTCCTAATGGTGCTAAATGGAAAGTGAAATGGAAAAAACTTGATGCTGATGTTGGGTTGATCGACGACTGGAAGAAATTTGCAGAAGCTTATTCATTGGACCAGGACCATCTTTTGGTGTTCAAATATGTTGGGAGTCAGAGTTTCAAGTTGTAA 291 0.4055 MSSHGCNIHFSKRIEEDTIRKGELRIPRSFVNKCWEGMSNPTLLLLPNGAKWKVKWKKLDADVGLIDDWKKFAEAYSLDQDHLLVFKYVGSQSFKL 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02567 96 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 95 - -
Gma08g02567 96 Pfam B3 DNA binding domain 13 95 IPR003340 GO:0003677
Gma08g02567 96 PANTHER B3 DOMAIN-CONTAINING 7 95 - -
Gma08g02567 96 ProSiteProfiles B3 DNA-binding domain profile. 9 96 IPR003340 GO:0003677
Gma08g02567 96 Gene3D - 3 96 IPR015300 -
Gma08g02567 96 CDD B3_DNA 9 93 IPR003340 GO:0003677
Gma08g02567 96 SMART B3_2 10 95 IPR003340 GO:0003677
Gma08g02567 96 SUPERFAMILY DNA-binding pseudobarrel domain 5 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02567 Gma-Chr8 38597861 38598379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02567 10 96 B3 DNA Binding Superfamily AT3G18990 34.483 4.93e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma08g02567 B3 5.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02567 - - ccaj:109795879 149.828