Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02560 ATGTCTCCGCCACTGCTGGTTACTGAAGAAGACGAAGGACAGAGCAATGCCTCGATGGTAGCATCTGCATCTTCACCCTCCTCGGAGTGTTTCACCCTAAATGAGGCTAGATTGAAAGAACGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTATTGTCCCGAGTTTGTCTGATGAGAAAAAGGAGAATCTGAATTTGAAGGCTACTGAGTTGAGGCTTGGACTTCCTGGATCCCAGTCACCTGAAAGGGATCCGGATCTTTTCTCGTTGAGCTCAACGAAACTCGATGAGAAGCCACTGTTCTCTTTGCTTCCTACAAAGGATGGAATCTGCTCACTGTCCCAAAAAACTGTGGTCTCAGGCAACAAAAGAGGTTTTGCTGACACAATTGACCCAGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGAGTTAAGCCTACCACAGTGAAAGAAATACCAAGCAAGGTATTACAAGAACATCCTTCTGCAGCAAATGGAACTGGTCATAACCATACGGGAGCTTCTATCAGTAGCAGTGCACCGGCTGCTAAGGCGCAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTGCAGCTGCAATCTTTGTGAAGGTCAGCATGGATGGGGCTCCCTATCTGAGGAAGGTAGATCTAACAAATTATACAACGTACCGGGAACTGTCTTCTGCACTTGAGAAAATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCACGGTTCGGAATATGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATCGACACATGCAAACGACTGAAAATCATGAAGGGTTCTGATGCTATTGGCTTAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGTAGCAATGATGATGGTTTGGTGGTGGCAATCAATGGTAATGTTATTGGTGGTGATGGTTGTAGTGGTGGTGGTGGTGACATGAGTGGTATTAGTGGTGGTGGTAGCTATAATGATAGTAATTGTGGTTGTGGTGGTAGTTGTGGTGACGGTCACAATGGTGATATTTTTGGTAATGATGGTGGTGACAGTAGCGAGGACATTAATGGTGGTGGAAGTGGTAGCAATGTTGGTGGTGATGTCAATGGCGACGATTGTGACAATGATAGTAGTGTTAGTGGTAGCGCCAAGTGGTGGGAGAGTGGTGGTTGCAATGACATTGATAATGGTTGTGGTGACATTGACAAAGGTGTTGGTGGTAACAGCAACACTAATGGTGGTGGTGATGTCGATGACAATGGTGGTAGTGGTAGCGATACTAGCGGTCATGGTGGTGATAATGATGGTGATGGTGACAATGTTGTGGCAGTGACAAATGTGGTATTGGTGGTGGTAATAGGAATGATGATAATGCAAGAAATACAACCAAGCACTAAGGTTCTTTGCCAGTCACTGTCATGGACTATCTCAAACAGTGCAAAGGTTGACAATTGA 1638 0.4536 MSPPLLVTEEDEGQSNASMVASASSPSSECFTLNEARLKERNYLGLSDCSSVDSSIVPSLSDEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFSLLPTKDGICSLSQKTVVSGNKRGFADTIDPEFPGNAGINMMLSPKPSGVKPTTVKEIPSKVLQEHPSAANGTGHNHTGASISSSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGAAAIFVKVSMDGAPYLRKVDLTNYTTYRELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSSSNDDGLVVAINGNVIGGDGCSGGGGDMSGISGGGSYNDSNCGCGGSCGDGHNGDIFGNDGGDSSEDINGGGSGSNVGGDVNGDDCDNDSSVSGSAKWWESGGCNDIDNGCGDIDKGVGGNSNTNGGGDVDDNGGSGSDTSGHGGDNDGDGDNVVAVTNVVLVVVIGMMIMQEIQPSTKVLCQSLSWTISNSAKVDN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02560 545 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 344 IPR003311 GO:0005634|GO:0006355
Gma08g02560 545 MobiDBLite consensus disorder prediction 9 28 - -
Gma08g02560 545 ProSiteProfiles PB1 domain profile. 230 334 IPR000270 GO:0005515
Gma08g02560 545 MobiDBLite consensus disorder prediction 468 500 - -
Gma08g02560 545 SUPERFAMILY CAD & PB1 domains 230 331 - -
Gma08g02560 545 Gene3D - 226 343 - -
Gma08g02560 545 MobiDBLite consensus disorder prediction 405 442 - -
Gma08g02560 545 PANTHER AUXIN-INDUCED PROTEIN 14 344 - -
Gma08g02560 545 MobiDBLite consensus disorder prediction 468 491 - -
Gma08g02560 545 MobiDBLite consensus disorder prediction 1 28 - -
Gma08g02560 545 Pfam AUX/IAA family 73 341 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02560 Gma-Chr8 38418890 38424777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02560 233 362 B3 DNA Binding Superfamily AT2G46530 30.769 1.59e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma08g02560 AUX_IAA 1.2e-89 CL0072