Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02546 ATGACCGAGTACCGGATGAACCTGTGGACCGACGACAACTCCTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTTGCCACGCCGCAGTCCGCCACCTCCACCACAACTCCAGGCACGGCAAAAGCCCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGGCGCAGTCCCAGTCCCTCCTCAACCAGGAGACTCTCCAGCAACGCCTCCAGACTCTCATCGAAGGCGCCTGCGAGAGCTGGACCTACGCAATCTTCTGGCAATCTTCCTACGACTATTCCTCCGGCACCTCCCTTCTCGGCTGGGGAGACGGTTACTACAAGGGCGAGGAGGACAAAGACAAAGTCAAAACCAAAGCCCCCAAAACGAGGTCGTCCGCAGAGCAGGACCATCGTAAGAAGGTCCTCCGCGAACTTAATTCCTTAATTTCCGGCCCTTCCGCTTCAGCTGACGACATTGACGAAGAAGTCACCGACACCGAGTGGTTCTTCCTGGTGTCGATGACTCAGTCCTTCGTCAACGGTAGCGGGCTGCCGGGCCAGGCTTTTTTTAACTCGAGCCCGGTCTGGGTCGCCGGGCCCGAAAGACTTTCCGAATCGGCCTGCGAACGGGCCCGCCAGGGGCAGCTCTTCGGGCTCCAGACTCTTGTCTGTATACCGTCCGCAAACGGCGTCGTCGAGCTCGCCTCCGCGGAGGTCATTTTTCAGAACCCCGATCTGATGAACAAGGTGCGTGATTTGTTCAACTTCAACAACAACAACAACAACAACCCTGAAACGTGTTCCTGGGCGTTGAATTGCGTTGCCACCACCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACCCTGAAATCAAAGACTCCTCCACCGTCTCGCAGCCGAATTCCACGGTTAATAAGACGATGCATTTCGAAACCCCTGGTTCCAGTACCCTAACCGAAACCCCTAGCGCTGCTGCTGCTGTTCACGTCCCCAATTCTAAAAGCCAGGGATTCTTCCCGAGGGAATTGAACTTTTCGAATTCATTGAAACCTGAATCCGGTGAAATTCTGAGCTTTGGGGAGAGCAAGAAGAGCTCTTACAATGGGGCTTTCTTTCCCGGTGTTGTTGCGGTTGAGGAGAACAACAACAATAACAAGAACAAGAAGAAGAGGTCCCCGGTGGTTTCTCGGAGCAGCATTGACGATGGAATGCTTTCCTTCACTTCCCTGCCGGCTGCAAATATAAAATCAGTTAACGGTGCTTGTGTCGGTGCCGGTGATTCGGATCACTCGGATCTGGAAGCTTCCGTGGCGAAACAGGTGGTGGAGCCCGAGAAACGGCCCCGGAAGAGAGGGCGAAAGCCGGCTAACGGAAGAGAGGAACCACTAAATCATGTGGAAGCCGAGAGACAGAGGAGAGAAAAGCTGAACCAAAGATTCTATGCTCTACGAGCTGTAGTTCCAAATGTATCCAAGATGGACAAGGCATCGCTGTTGGGGGACGCCATATTGTACATTAACGAGTTGAAATCGAAGCTCAACGTGCTGGATTCAGAGAAAACGGAATTGGAGAAGCAATTGGATTCAACCAAGAAGGAACTCGAGCTCGCAACTAAAAACCCTCCTCCACCGCCACCGCCGCCACCACCACCAGGACCGCCTCCATCTAATAGCGTAGAACCAAAGAAGACAACAAGCAAGCTCGCTGATTTGGAGTTAGAGGTGAAGATCATTGGTTGGGATGCAATGGTAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCCAGGTTGATGGCAGCATTGAAAGATCTTGACTTGGAAGTGCATCACGCCAGCGTGTCTGTGGTGAATGATTTGATGATCCAACAAGCCACGGTGAACATGGGAAACAAGTTTTACACGCAGGAACAGCTTCTGTCGGCACTATCATCCAAAGTTGGCGATGAACTACGATAG 1962 0.5362 MTEYRMNLWTDDNSSVMEAFMSSSDLSSLWLATPQSATSTTTPGTAKAPPPPPPPPPPPAQSQSLLNQETLQQRLQTLIEGACESWTYAIFWQSSYDYSSGTSLLGWGDGYYKGEEDKDKVKTKAPKTRSSAEQDHRKKVLRELNSLISGPSASADDIDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPERLSESACERARQGQLFGLQTLVCIPSANGVVELASAEVIFQNPDLMNKVRDLFNFNNNNNNNPETCSWALNCVATTDQGENDPSSLWLNPEIKDSSTVSQPNSTVNKTMHFETPGSSTLTETPSAAAAVHVPNSKSQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGAFFPGVVAVEENNNNNKNKKKRSPVVSRSSIDDGMLSFTSLPAANIKSVNGACVGAGDSDHSDLEASVAKQVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAILYINELKSKLNVLDSEKTELEKQLDSTKKELELATKNPPPPPPPPPPPGPPPSNSVEPKKTTSKLADLELEVKIIGWDAMVRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGNKFYTQEQLLSALSSKVGDELR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02546 653 PANTHER TRANSCRIPTION FACTOR MYC2 9 649 - -
Gma08g02546 653 Coils Coil 507 541 - -
Gma08g02546 653 MobiDBLite consensus disorder prediction 45 62 - -
Gma08g02546 653 Gene3D - 453 540 IPR036638 GO:0046983
Gma08g02546 653 SMART finulus 467 516 IPR011598 GO:0046983
Gma08g02546 653 MobiDBLite consensus disorder prediction 31 64 - -
Gma08g02546 653 MobiDBLite consensus disorder prediction 115 136 - -
Gma08g02546 653 MobiDBLite consensus disorder prediction 539 559 - -
Gma08g02546 653 MobiDBLite consensus disorder prediction 434 471 - -
Gma08g02546 653 MobiDBLite consensus disorder prediction 537 566 - -
Gma08g02546 653 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Gma08g02546 653 CDD bHLH_AtAIB_like 458 534 - -
Gma08g02546 653 Pfam Helix-loop-helix DNA-binding domain 465 510 IPR011598 GO:0046983
Gma08g02546 653 SUPERFAMILY Formin homology 2 domain (FH2 domain) 49 59 - -
Gma08g02546 653 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 253 IPR025610 -
Gma08g02546 653 PANTHER MYC 9 649 IPR045084 GO:0003700|GO:0006355
Gma08g02546 653 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 530 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02546 Gma-Chr8 38009779 38012178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02546 1 649 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.882 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g02546 bHLH-MYC_N 1.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02546 K13422 - gmx:100785708 1148.27