Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02539 ATGGCTGCTGTTGTCAACCCCAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCACAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTACATTGTGTATCCCCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATCGCAATCATTGGAATCTTGGCCACTGCTTTTCTTCTGGCGAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCAGAGAGTCCGCACGTAGAGACCCAAATGATGAAAACTTACAAGACGACCTCAACCACAATTCATATCTCCGCGAGCATGCTTCAATCGCGGGTCTGGACGAAGCTATGATCAAATCCATTGCGGTTTTCAAGTACAAGAAAGGAAGTATTGGTGGTTCTGCTGGAGTCACGGATTGTTCAGTTTGCCTAAGCGAGTTTGAAGATGATGAAAGTGTTAGGCTCTTGCCAAAGTGCAGCCACGTTTTCCATGCTCCTTGCATCGACACGTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGTCGTGCTGGCATATTCACCTTCACTTCTTCGGCGGCGCCACCACCTCAGGATGAGGCCGAGGCCCCTTCAAGAAACCAGACTACTCATCATAATGAAAGTGGCGGCTACGAGTTTGGCGTGGTGGCGCTTCAAGAAGAAGAAGAAGAAAGCATGCATCACGCTAGAGCATATCCAAATCCTGCATTGCGCGCTTTTAGCGACTTGAGTTGCTTTCAGGGTAGGCACAGAGTGATTGATATTAGGGACGAAGTGTGCGAATCCGTCGGTAGGTCGGTGTCTATGGACCATTCGTCATTTCAAAGTGCTCTTTCGATTGCTGATGTGTTGCAAATGAGTGAAGAGGAAGATGCCACTGAAGCTGGCCCTTCAAAGAGGTCACGCGGAGAGAGTAGCAAGTGCAGATACAAAACAAGGGTGTTGCATTGTGTGCTGAGCCCAATTTCAATGAAGAGATCATCGTTTTCCAGTGGAAGAAGATTCTCGGTTAGCAAAAGTGGCAGAGGAAATTAG 1059 0.4778 MAAVVNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLASYYTLISKYCGPRESARRDPNDENLQDDLNHNSYLREHASIAGLDEAMIKSIAVFKYKKGSIGGSAGVTDCSVCLSEFEDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAGIFTFTSSAAPPPQDEAEAPSRNQTTHHNESGGYEFGVVALQEEEEESMHHARAYPNPALRAFSDLSCFQGRHRVIDIRDEVCESVGRSVSMDHSSFQSALSIADVLQMSEEEDATEAGPSKRSRGESSKCRYKTRVLHCVLSPISMKRSSFSSGRRFSVSKSGRGN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02539 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Gma08g02539 352 SUPERFAMILY RING/U-box 141 192 - -
Gma08g02539 352 MobiDBLite consensus disorder prediction 296 315 - -
Gma08g02539 352 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gma08g02539 352 SMART ring_2 142 183 IPR001841 -
Gma08g02539 352 Pfam Ring finger domain 141 184 IPR001841 -
Gma08g02539 352 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 348 - -
Gma08g02539 352 MobiDBLite consensus disorder prediction 194 216 - -
Gma08g02539 352 MobiDBLite consensus disorder prediction 300 315 - -
Gma08g02539 352 CDD RING-H2_PA-TM-RING 141 184 - -
Gma08g02539 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 348 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02539 Gma-Chr8 37757691 37759367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02539 1 347 C3H Transcription Factor Family AT3G03550 38.021 3.09e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02539 - - gmx:100812969 687.182