Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02513 ATGCTTCAGGCTCGGTCCCTGTTCATCAAGAACCTAAATTTCAAGACTATGGATGAAAGTCTGAGGAAACATTTAACTGAACACATGAAAAAGGGAAGCATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAAAGATTTACAGGGGCCAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTAATGTCAAGAATGATGGGCAAAAACAAAAGACAATTGAGAAGGATATGAGTTTAACAAAATTGCTCATAAAAAAATGTTGCTTTTGA 345 0.3652 MLQARSLFIKNLNFKTMDESLRKHLTEHMKKGSILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCKDLQGPVLDSHALILQPCNVKNDGQKQKTIEKDMSLTKLLIKKCCF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02513 114 Gene3D - 1 112 IPR012677 -
Gma08g02513 114 SMART rrm1_1 6 84 IPR000504 GO:0003723
Gma08g02513 114 CDD RRM5_RBM19_like 5 86 IPR034423 -
Gma08g02513 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 88 IPR000504 GO:0003723
Gma08g02513 114 PANTHER AGAP005249-PA 6 84 - -
Gma08g02513 114 SUPERFAMILY RNA-binding domain, RBD 4 93 IPR035979 GO:0003676
Gma08g02513 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 81 IPR000504 GO:0003723
Gma08g02513 114 PANTHER RNA BINDING PROTEIN 6 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02513 Gma-Chr8 36991405 36991921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02513 2 93 Eukaryotic Initiation Factors Gene Family AT1G71770 31.522 8.96e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02513 K14787 - gmx:100796243 208.379