Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02496 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGACCCCAACTTCCGGGAGGCCTATCTGCCACCTGGACCTCCTGTTGGCCACTGGAGTCAAGCCAAACGGAGAGGTTATGATGAAGATTATGCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCGTATAATCAGATTGATGGTTTCAGGGATCGTGAGATTGACACCTATCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTTGGAAATGACCATGGTGATGATTATGCATATGATGATGATTATGACTACAAGTCTCGAGCGTCCTCTCATCATCATAGGGAGGATAGCCATGAGAGGGATTATGATCATAGTCGACATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGCAACGCGAATCACGTGATCGGGAAAGAGATAAGAGAGGTCATAGTCGGGAAAGAGATCTGAGTCCACATAGGAGACGTGAGCGTTCTCGTTCCCATTCTCGTTCTCGATCCCGGTCTCATTCCCATTCTCATTCCCGATCTCAATCTCGTGGACATGATGACCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAAGGCAGATAGCTATTCTGACAGTCGATATGACAAAAGCGAAAGACGTAGGGATCGTGATGATAAACGTCAGCGAGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGCCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACCGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGTACTATATGTGGCTACATTAATTTTGCGCGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCACCTGCAGCAGATATTTCATTGTCAAATTCAGCAGCTATAGGAAAGAAAGGTTCAGAGGCAGGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTCGATGATGCTACCAAAGCTCTCGAGGCAACAAATGGAACTATGCTAGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTAGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGCCAAACAATCTACTGGTCCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGCTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACACACCTTGCACTGATCAAAATCAGAATAAAACGTCTAATAACGAGTCTGAACCTTCTAAGGTATCTGATAGTTCTGAAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTGCTTCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTACAGGCTGCAGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATACTGGCAAACAAGAAAAAAATGAACAATGTGTTGACCATGTGGAAGCAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGGCATTCTGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCGGGAAGTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCGGGCACAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAAGTTTACCTTCAGCGAATGCTGATGCACAGACATTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCGACTGTTGGAAGTGGTCGAAGAAGGTTTTCGGAAATGCCTCAATCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACAGGGACCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTAGCTGACCTTGAAATTGGGGATTCAAGTAAGACTACTTAA 2724 0.4449 MDPGRYALHQGWDNNSALEGYGAVHDPNFREAYLPPGPPVGHWSQAKRRGYDEDYALDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGNDHGDDYAYDDDYDYKSRASSHHHREDSHERDYDHSRHSYDSDYERGSRRDSNWRQRESRDRERDKRGHSRERDLSPHRRRERSRSHSRSRSRSHSHSHSRSQSRGHDDHPRSRSPRGRSHGRSYKADSYSDSRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSMGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVDDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDAKQSTGPEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYTPCTDQNQNKTSNNESEPSKVSDSSESKKVISAPATTVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHSAKNKLKNETMVRESNASNPGSHTTLAQVAAIDSRAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSGSTSVASSMPSLPSANADAQTFATPFRTDVSALGSYTPSATVGSGRRRFSEMPQSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSSKTT 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02496 907 ProSiteProfiles Zinc finger RanBP2 type profile. 376 405 IPR001876 -
Gma08g02496 907 MobiDBLite consensus disorder prediction 615 643 - -
Gma08g02496 907 SMART rrm1_1 432 507 IPR000504 GO:0003723
Gma08g02496 907 SMART rrm1_1 275 350 IPR000504 GO:0003723
Gma08g02496 907 MobiDBLite consensus disorder prediction 216 268 - -
Gma08g02496 907 MobiDBLite consensus disorder prediction 197 215 - -
Gma08g02496 907 Gene3D - 375 406 - -
Gma08g02496 907 CDD RRM1_RRM2_RBM5_like 429 509 - -
Gma08g02496 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 431 511 IPR000504 GO:0003723
Gma08g02496 907 MobiDBLite consensus disorder prediction 843 869 - -
Gma08g02496 907 SUPERFAMILY Ran binding protein zinc finger-like 371 406 IPR036443 -
Gma08g02496 907 Pfam OCRE domain 568 616 IPR041591 -
Gma08g02496 907 MobiDBLite consensus disorder prediction 133 271 - -
Gma08g02496 907 MobiDBLite consensus disorder prediction 883 907 - -
Gma08g02496 907 CDD RRM1_RRM2_RBM5_like 272 352 - -
Gma08g02496 907 MobiDBLite consensus disorder prediction 133 196 - -
Gma08g02496 907 MobiDBLite consensus disorder prediction 843 907 - -
Gma08g02496 907 ProSitePatterns Zinc finger RanBP2-type signature. 380 399 IPR001876 -
Gma08g02496 907 PANTHER FI21118P1 190 886 - -
Gma08g02496 907 MobiDBLite consensus disorder prediction 714 763 - -
Gma08g02496 907 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 354 IPR000504 GO:0003723
Gma08g02496 907 SMART zf_4 378 402 IPR001876 -
Gma08g02496 907 PANTHER RNA-BINDING PROTEIN 190 886 - -
Gma08g02496 907 SUPERFAMILY RNA-binding domain, RBD 263 359 IPR035979 GO:0003676
Gma08g02496 907 CDD OCRE_SUA_like 565 617 IPR035623 -
Gma08g02496 907 Gene3D - 415 536 IPR012677 -
Gma08g02496 907 Gene3D - 239 374 IPR012677 -
Gma08g02496 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 433 499 IPR000504 GO:0003723
Gma08g02496 907 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 335 IPR000504 GO:0003723
Gma08g02496 907 SUPERFAMILY RNA-binding domain, RBD 429 518 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02496 Gma-Chr8 35832357 35838679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02496 273 495 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 2.07e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02496 K13094 - gmx:100787998 1548.49