Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02492 ATGGAGGAGATTCTTAAAGACCATGGGGATTTGATTTTGGGATTCAACAAGTTTTTGCCAAAGGGATATGAAATCTTACTTCTAGATGAGGGTGAGGATGGGTTTGGAAATGCTTCAAAATATTTGAAGAAGATTCAGGATCAATTTGAAAACAAAGATCATGTTTACAAGTCATTTCTAAATATACTTCTTAAGTACAAAAATAATGGAGTCACTCTTTATGATACATACCATGAGGCTGCTACACTTTTTGAGGGTCACCGTGATCTTGTTCGTGACTTCACTAAGTTTCTGCCATCTGTACATCTAAGGGGAAAATCTACTTAA 327 0.3547 MEEILKDHGDLILGFNKFLPKGYEILLLDEGEDGFGNASKYLKKIQDQFENKDHVYKSFLNILLKYKNNGVTLYDTYHEAATLFEGHRDLVRDFTKFLPSVHLRGKST 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02492 108 Gene3D Paired amphipathic helix 37 99 IPR036600 GO:0006355
Gma08g02492 108 SUPERFAMILY PAH2 domain 33 99 IPR036600 GO:0006355
Gma08g02492 108 Pfam Paired amphipathic helix repeat 54 98 IPR003822 GO:0006355
Gma08g02492 108 ProSiteProfiles PAH domain profile. 31 101 IPR003822 GO:0006355
Gma08g02492 108 PANTHER SIN3B-RELATED 2 100 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02492 Gma-Chr8 35579323 35580118 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02492 36 98 WRKY Transcription Factor Family AT4G12020 36.508 6.10e-07 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma08g02492 PAH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02492 K11644 - var:108321439 110.538