Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02478 ATGAGTTCGTTCTCCATCACGCGGAAAAAGACGCCGTTCCAGAAGCATAGAGAAGAGGAGGAAGCAAAGAAGAAGAGAGCAGAAGATGAGACTGCTCGCCTGTATGCTGAGTTTGTAGAGTCATTTCAAGGAGATACTACTCCTGGGTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAAATTTAAAGATGATTCTGAGGGTGAAAAGTCTAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCTCCGCCAATGGCAACCAAAGGAAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCTAAAGGAGAAAGAGAAAGGGAAGGCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCGTGACGGGCGTCTTACAGAACATTCTATTTCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGAGAAGGCGGCAAAGAAACTGTGGATTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCGAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATCGGATGGGGAAAATCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGTCCTTCAGGTCCGCCAGTAACATCTGTTCCTAATCAGAATTCTGAACTGGTTCTAACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGCATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTATTCTTGGCTCAAAGGAACATACCTACTATGTTTGGAGGCTCTACTCATTTGCCCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCGCCCCAATTACCAATGTCAAAAAGTCCAGAGCATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCCGACAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGATAGTTGAAGTTTTGACAGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTTTCTGATATTCTTCATAATAGTAGTGCTCCTGTACGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACATTGCCAGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATTATGGGACGTATCACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGATTAAGGGCCACTTTCCTTCGACCTGGGAACTCCGGTGTAATTCCATTCCATTCCATTTGTGGTGATGCGCCTGAGATTGAGCAGAATACCACTTCCAAAGATATGGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGGCACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAGAGAGGTTTTGAACTAGATGAAGAATTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAATATTCAAGTAATCAACGAGAAACAAGTGAAGAGCCTGACCCAGTATGGAACCACTATGGGGATGAAGATTTGCAGTCACAGGGCAGAAGTTCTGTACCTTTATCCCCAACACTTCCTATTGCACAACCTGAACTTAAAGCTTTCACAAAAAAGGAGAAGAATGATCCAGTTCTGCCAGCCTCTAAATGGGCTTGGGAGGGTGATGAGAGTGATGATGAACAAAGGAGAAGTGGAAAAAATATCGGCTTAAGCTACTCATCTTCTGGTAGTGAGAACGTGGGTGATGGTCTTGTTAAAGCTGATGAATCAGAGTCTGCAGCTGATACACGTTTTTCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGTTGCAAAAGCTGAGACGCTTAGAGGTTGCTTTAATTGAATACCGTGAGTCTCTTGAAGAGAGGGGAGTTAAAAATTTGGAGGAAATTGAGAAGAAAGTTCAGTCACATAGGAAACGGCTGCAAGTGGAGTATGGGTTATCAGATTCTGGTGAAGATGGTCATGGCCATAGAAGAACTTCAGAGAGGAGGGATTGGAATGATGTTTCAAGGAAACGGCATCGAAGCCCTAGTCCAAGTGGTAGTCCACTGCCAAAATTATATGGCAAGGACAGAGATAGAGAACACCACGATTTAGAAAGGGATCGAGACAGACAAAGAGACAGAAGTCATGATTTCGATAGTGAAAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGAGATGATCATGATAAGGATAGAAGCAGGGATAGAGACAGGGACAGGAGAAGACGAGCCAAATAA 2913 0.4391 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDKFKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKLKEKEKGKARNIDHFMEELKHEQEMRERRNQEREHWRDGRLTEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALHVLDGGCAFEQAIMERGRGNPLFNFLFILGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPMSKSPEHEKESGSTHAGGRSRRVEPDRTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQNTTSKDMVVGGKTNQDAALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGFELDEELKYAHNQVSSGKYSSNQRETSEEPDPVWNHYGDEDLQSQGRSSVPLSPTLPIAQPELKAFTKKEKNDPVLPASKWAWEGDESDDEQRRSGKNIGLSYSSSGSENVGDGLVKADESESAADTRFSAHADSGMNEEQRLQKLRRLEVALIEYRESLEERGVKNLEEIEKKVQSHRKRLQVEYGLSDSGEDGHGHRRTSERRDWNDVSRKRHRSPSPSGSPLPKLYGKDRDREHHDLERDRDRQRDRSHDFDSERGRDRHREKSGSRERDDHDKDRSRDRDRDRRRRAK 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02478 970 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Gma08g02478 970 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Gma08g02478 970 MobiDBLite consensus disorder prediction 61 80 - -
Gma08g02478 970 Gene3D - 815 867 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 906 963 - -
Gma08g02478 970 Pfam cwf21 domain 816 861 IPR013170 -
Gma08g02478 970 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Gma08g02478 970 Coils Coil 843 863 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 755 820 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 852 894 - -
Gma08g02478 970 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Gma08g02478 970 MobiDBLite consensus disorder prediction 691 706 - -
Gma08g02478 970 Pfam CID domain 450 578 IPR006569 -
Gma08g02478 970 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Gma08g02478 970 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Gma08g02478 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Gma08g02478 970 PANTHER RNA PROCESSING PROTEIN LD23810P 5 966 - -
Gma08g02478 970 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Gma08g02478 970 SMART 558neu5 450 585 IPR006569 -
Gma08g02478 970 Gene3D - 96 269 IPR012677 -
Gma08g02478 970 Coils Coil 17 37 - -
Gma08g02478 970 SMART rrm1_1 187 263 IPR000504 GO:0003723
Gma08g02478 970 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Gma08g02478 970 Gene3D - 443 589 IPR008942 -
Gma08g02478 970 MobiDBLite consensus disorder prediction 410 446 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 793 820 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 99 118 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 417 446 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 852 970 - -
Gma08g02478 970 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Gma08g02478 970 SMART cwf21_2 816 865 IPR013170 -
Gma08g02478 970 MobiDBLite consensus disorder prediction 11 35 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 775 789 - -
Gma08g02478 970 CDD RRM_SR140 185 268 IPR035009 -
Gma08g02478 970 MobiDBLite consensus disorder prediction 43 57 - -
Gma08g02478 970 Coils Coil 448 468 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 719 733 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 690 733 - -
Gma08g02478 970 MobiDBLite consensus disorder prediction 1 118 - -
Gma08g02478 970 PANTHER - 5 966 - -
Gma08g02478 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02478 Gma-Chr8 33688042 33708581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02478 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.91e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02478 K12842 - gmx:100775729 1786.93