Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02468 ATGTCGAGCTCACTGGCGGAGAAGTCCACCTTCTCTCGGACTTGTACTCTTCTGAGGCAATACCTCAAGGAGAAGGGCAGCTTTGGAGACCTTACCCTCGGGATTGCCTTAGCATGCACCAACGGTTCCCCTGACACATCATGTCACTCTGCAACAACCATGCAGTCTGTTTATCCTCGCCACTTGGAGATTCCAACTTTTATTAACCCAAGGTCTATGGAGAAGGAGGCTAAAGCTTCTCAGTTGACTATCTTCTATGATGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGATAAAGTGCAGGAGATGAAGATGGCTACTGCAGCAGGTGCAACTTCCCTTTTGTACTACACATTGAATCAGAAATTGCAGACTCACGATGTAATTGATGAAGATGGTGAAGAAAATGGGAGTGATCCGCTAGCTGATACGCCATTAGGTATTGACCTTGTTTCTCATCGGTTAATCCAAGCCCCTGCAACATGGTTGGAGACAATTTCTACATTGTCAGAAACTCTCAGGTTCACTTATTCGGAGACACTTGGGAAATGGCCAATTGGGGATTTGGCGTTTGGTATCAGCTTTCTTCTAAAGCGGCAGGGAAACTATCATGTGGGCAGTGAATTTTGTGGTAAGGACAGTGTACAGCTGAAAGGATCTGAAATTACTGTTGAACTTAAGTATCTCTTAAACTTGTTGACATTGTGTTGGCACTTTTCAAAGAAGCCCTTTCCCTTGTTTTTAGAAGAAACTGGCTACACGGAAGAAAACGTTCTCCTTCGAGAAGCAAAAGCAGGAATTTTGAAACCAGCTTTTACAATAATAGCTGATCACGAGATGGGATGCCTTTTGTTATTGATTCGTGGCACGCATAagctaaacactaacaTCAAGGATACTTTAACAGCTGTTACTGGAAATGTGGTACCATTTCATCACATTGTTGTTAATCAGGGGGGTGTCAGTGATTTGATTGTAGGACACTCTTTGGGTGGAGGAACTTCCGCAATTCTAACTTATGTGTTGAGAGAGAGAAAGGAACTGTCCGTAACCACGTGCGTTACATTTGCTCCAGCTGCTTGTATGACATGGGAGTTGGCAAAGTCAGGTGATAGTTTTATTACTTCTATTATAAATGGAGCTGATTTGGTGCCTACATTCTCAGCTGCTTCTATAGATGACTTGCATTTTGAGGTTGTGACATCATCAGCATGGATAAATGACTTGAGGAATCAATTGAGCAAACAAGAAAATGACTGGGATTCAGAGCTTTGCATGTCTAGGGTTTCTAGAGAGAGAAAGGTCCAAGTTCCCGAGAATTTTGAGAGATTTTGCTATGTGAAGATCTGCAAAGACCAGAGCTTGAAGTAG 1374 0.4243 MSSSLAEKSTFSRTCTLLRQYLKEKGSFGDLTLGIALACTNGSPDTSCHSATTMQSVYPRHLEIPTFINPRSMEKEAKASQLTIFYDGQVVVFDDFPADKVQEMKMATAAGATSLLYYTLNQKLQTHDVIDEDGEENGSDPLADTPLGIDLVSHRLIQAPATWLETISTLSETLRFTYSETLGKWPIGDLAFGISFLLKRQGNYHVGSEFCGKDSVQLKGSEITVELKYLLNLLTLCWHFSKKPFPLFLEETGYTEENVLLREAKAGILKPAFTIIADHEMGCLLLLIRGTHKLNTNIKDTLTAVTGNVVPFHHIVVNQGGVSDLIVGHSLGGGTSAILTYVLRERKELSVTTCVTFAPAACMTWELAKSGDSFITSIINGADLVPTFSAASIDDLHFEVVTSSAWINDLRNQLSKQENDWDSELCMSRVSRERKVQVPENFERFCYVKICKDQSLK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02468 457 Pfam Lipase 3 N-terminal region 151 230 IPR005592 GO:0016042
Gma08g02468 457 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 326 417 - -
Gma08g02468 457 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 105 326 - -
Gma08g02468 457 Pfam tify domain 77 103 IPR010399 -
Gma08g02468 457 ProSiteProfiles Tify domain profile. 75 110 IPR010399 -
Gma08g02468 457 PANTHER LIPASE CLASS 3 FAMILY PROTEIN 326 417 - -
Gma08g02468 457 PANTHER LIPASE CLASS 3 FAMILY PROTEIN 105 326 - -
Gma08g02468 457 SUPERFAMILY alpha/beta-Hydrolases 232 401 IPR029058 -
Gma08g02468 457 CDD Lipase 297 413 - -
Gma08g02468 457 Gene3D alpha/beta hydrolase 318 457 IPR029058 -
Gma08g02468 457 SMART tify_2 75 109 IPR010399 -
Gma08g02468 457 Pfam Lipase (class 3) 323 390 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02468 Gma-Chr8 31928599 31937471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02468 115 414 Acyl Lipid Metabolism Gene Families AT3G14075 64.897 2.90e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma08g02468 Lipase_3 1.9e-11 CL0028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02468 - - gmx:100788200 613.994