Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02448 ATGAAGGTTTTCGTGAAGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAAGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAGcgcgagcaggaacagcaACATGGAACTCCAGCGGCACCACGCGAACGCGACGCAGCACACCGCACCAGCACCTGCACCACGACGGCAAACTcagcaccccgcaccagcaccatgctcgcgacacggcaccccgcaccagcgcaccacacacacgacgaacggacggtgacggtggcggcggcggcaacggctacagtctgtgacggcaagCCAAGTGCAACTCCTACTTCAACTTCTGTGTCTACTGCACCTCAAGCTCCTGCTTCAACTGGAGCATCGGCTACACCTGTTACTGCCCCAAcagctgctcctgcacctgcacctgcaccagctgctccagctccagctcctgcTCCTATATTTTCAGGCTCTTCTGTGCCAGAGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGTAACTTGGAGGGAACAATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTCGCACCCTTCGTGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCTGGCATACCAGAGCAAGCCGAAGCTCCACCAGTTACCGGAGTGCCTGCAAGTGCTCAACCTTCAAATCCTCCAGCTGATACTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGGTCTGGTGCTGCTGGTGCTGGTTCCTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1413 0.4084 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAKREQEQQHGTPAAPRERDAAHRTSTCTTTANSAPRTSTMLATRHPAPAHHTHDERTVTVAAAATATVCDGKPSATPTSTSVSTAPQAPASTGASATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPADTPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02448 470 MobiDBLite consensus disorder prediction 101 115 - -
Gma08g02448 470 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma08g02448 470 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gma08g02448 470 Gene3D - 232 282 - -
Gma08g02448 470 MobiDBLite consensus disorder prediction 163 191 - -
Gma08g02448 470 MobiDBLite consensus disorder prediction 77 131 - -
Gma08g02448 470 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 140 - -
Gma08g02448 470 MobiDBLite consensus disorder prediction 297 324 - -
Gma08g02448 470 PANTHER UV EXCISION REPAIR PROTEIN RAD23 149 469 - -
Gma08g02448 470 MobiDBLite consensus disorder prediction 116 131 - -
Gma08g02448 470 TIGRFAM rad23: UV excision repair protein Rad23 152 469 IPR004806 GO:0006289
Gma08g02448 470 SUPERFAMILY XPC-binding domain 342 407 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma08g02448 470 SUPERFAMILY UBA-like 236 291 IPR009060 GO:0005515
Gma08g02448 470 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 423 464 IPR015940 -
Gma08g02448 470 SMART uba_6 239 279 IPR015940 -
Gma08g02448 470 SMART uba_6 426 463 IPR015940 -
Gma08g02448 470 Gene3D - 336 401 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma08g02448 470 MobiDBLite consensus disorder prediction 287 332 - -
Gma08g02448 470 PRINTS DNA repair protein Rad23 signature 371 393 IPR004806 GO:0006289
Gma08g02448 470 PRINTS DNA repair protein Rad23 signature 452 467 IPR004806 GO:0006289
Gma08g02448 470 PRINTS DNA repair protein Rad23 signature 437 451 IPR004806 GO:0006289
Gma08g02448 470 PRINTS DNA repair protein Rad23 signature 420 436 IPR004806 GO:0006289
Gma08g02448 470 SMART CBM 343 386 IPR006636 -
Gma08g02448 470 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gma08g02448 470 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 140 - -
Gma08g02448 470 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 149 469 - -
Gma08g02448 470 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma08g02448 470 MobiDBLite consensus disorder prediction 77 99 - -
Gma08g02448 470 CDD UBA1_Rad23_plant 233 282 - -
Gma08g02448 470 Pfam XPC-binding domain 345 400 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma08g02448 470 SUPERFAMILY UBA-like 407 469 IPR009060 GO:0005515
Gma08g02448 470 MobiDBLite consensus disorder prediction 162 208 - -
Gma08g02448 470 Pfam UBA/TS-N domain 242 277 IPR015940 -
Gma08g02448 470 Pfam UBA/TS-N domain 426 461 IPR015940 -
Gma08g02448 470 Gene3D - 1 80 - -
Gma08g02448 470 Gene3D - 418 465 - -
Gma08g02448 470 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 237 280 IPR015940 -
Gma08g02448 470 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02448 Gma-Chr8 29135454 29146839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02448 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.55e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02448 K10839 - gmx:100813881 645.195