Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02444 ATGCTTCTGTGTTTTCTTCCGTGCTTCCTCCTTATAATTCTCAGATTTATTGGAGGTCTCACTAGAAGGATCAGCACCAATCCGTGCCTGTTCCTCCTCTACCAGCTCAATATCTTTCCTTTCACCTTTGCTTTTGTAAACTACACTGTAATTTACAAAACAAAAGTTGAAAGGAAAGATATTGACCTGGTAGACGAGGAAGAAGCACAGATTGGTGCTGATCATTCTAGTGCAACCTCGAATAAAGCTGAGATTTATAACGATGAGGCACAGAAGAAAACACAGAAGCATAAACCAAAGAGGGTGGAGAGTGTCAATGATGATGCAGAAGCCTTTGGTGATCATTGGAAAATTTTGATTTGCTTTATGCATTCTGAAGCTAAGGCACTAGAACATATGAAAAAAAGAGATACAGGCCATCAAAGTGTGTCATTGGAGAATAAGACAGGAGATTCAACTATGCTGAAGATGGGAGATTCAGCTAAAGTTGTGATAAAACAAGACATGAAGGGAAGAAAGCATAAATATGGGTTTAACAACAATAAACGTGAGAAGATAGAGAAGAAAAGGGTGGTGGATGATGAAACTGGCGACAAACATCAGCTGGATGAAGTCCTAAGGAGGCAAATTGAAACAAAAAACCGATTCCTCAATCAGAGAAAAATAACTTGCCCCAAGACACAGCAGACACTTGTGCATACAACCCTTACCCCTAACTATGTTTTGAAGACTTTGATTGCTTTGTGGTGTGAAAGCAACGGTATTGAGCTACCAAAGAGGCAAGGGAACTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGAGGATGCTGCTACTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTACAGGTAAGAAGGATGCTGCTACTGCTATCTTCAACCTATCTATTTATCAGGGAAATAAACCAAGAGCTGTAAAAGCTGGTATAATAGCCCTACTGATACAATTTTTGAAGGATGCTGGAGGTGGAATTGTAGATGAAGTAGTAGCTATTATGGAAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATCGATCCACTGCAATTAAAACTAGCGAAAGAACATGGTGCAGAAGCAGCATTGCAGGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGATAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGTTGATAATTTGCAGAGTTCATAG 1221 0.4046 MLLCFLPCFLLIILRFIGGLTRRISTNPCLFLLYQLNIFPFTFAFVNYTVIYKTKVERKDIDLVDEEEAQIGADHSSATSNKAEIYNDEAQKKTQKHKPKRVESVNDDAEAFGDHWKILICFMHSEAKALEHMKKRDTGHQSVSLENKTGDSTMLKMGDSAKVVIKQDMKGRKHKYGFNNNKREKIEKKRVVDDETGDKHQLDEVLRRQIETKNRFLNQRKITCPKTQQTLVHTTLTPNYVLKTLIALWCESNGIELPKRQGNCRTKKCGGSSLSEDAATALIKLLCEGTPTGKKDAATAIFNLSIYQGNKPRAVKAGIIALLIQFLKDAGGGIVDEVVAIMEILASHHEGRVAIDPLQLKLAKEHGAEAALQELSENGTDRAKIKAGSILELLQRMEGVDNLQSS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02444 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 277 355 - -
Gma08g02444 406 ProSiteProfiles U-box domain profile. 215 256 IPR003613 GO:0004842|GO:0016567
Gma08g02444 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 356 398 - -
Gma08g02444 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 215 274 - -
Gma08g02444 406 PANTHER U BOX DOMAIN-CONTAINING 356 398 - -
Gma08g02444 406 Gene3D - 262 400 IPR011989 -
Gma08g02444 406 SUPERFAMILY RING/U-box 217 259 - -
Gma08g02444 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 256 IPR013083 -
Gma08g02444 406 SUPERFAMILY ARM repeat 275 381 IPR016024 -
Gma08g02444 406 MobiDBLite consensus disorder prediction 82 105 - -
Gma08g02444 406 PANTHER U BOX DOMAIN-CONTAINING 215 274 - -
Gma08g02444 406 PANTHER U BOX DOMAIN-CONTAINING 277 355 - -
Gma08g02444 406 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02444 Gma-Chr8 28449556 28453836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02444 282 400 U-box Gene Family AT3G54850 50.980 1.01e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02444 - - gmx:100807047 308.531