Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02438 ATGGGGGGAGAAGAAGTAGCAAGAGTCAAAGCAGAGTTGTTCAATGACAGAAAAAGCGATTGCAATGACGATGAAGTTTTGAGCGAGAGCAAGGACTCGGGAGTGGCAACGGAAAAAGTAACGATGAGGACGAAGACTCACACAGTGAAAGAAGAGATGGATGACGGTGCCGTTAACTGGTCTTCATCTTCATCGACGTCAATGTTTGAAATGGTGGAGGATCCTCACACCAACCCCATTGTGTTATGGAGCCAAACTTGCGATAGTTTCATCGTTTGGGACTCGCACGAGTTCTCCAAAACCCTTCTCCCAAAGTACTTCAAGCACAACAATAATTTCTCAAGCTTCGTTCGCTAG 357 0.4594 MGGEEVARVKAELFNDRKSDCNDDEVLSESKDSGVATEKVTMRTKTHTVKEEMDDGAVNWSSSSSTSMFEMVEDPHTNPIVLWSQTCDSFIVWDSHEFSKTLLPKYFKHNNNFSSFVR 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02438 118 SMART hsfneu3 65 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma08g02438 118 Pfam HSF-type DNA-binding 67 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma08g02438 118 Gene3D - 61 118 IPR036388 -
Gma08g02438 118 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 50 118 - -
Gma08g02438 118 PRINTS Heat shock factor (HSF) domain signature 64 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma08g02438 118 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma08g02438 118 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 50 118 IPR027725 -
Gma08g02438 118 SUPERFAMILY "Winged helix" DNA-binding domain 67 118 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02438 Gma-Chr8 27537950 27538306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02438 66 118 HSF AT2G26150 64.151 3.44e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma08g02438 HSF_DNA-bind 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02438 K09419 - gmx:100778060 169.859