Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02421 ATGGATGATCAATCAATATCAATGGTTAATTGCCCTCCTTCCTTTGCAACAGAGCTTAACATTCTGCTATTAAATAACAACACATTGTCTCTTGTGTATCTGTCATCACTGTTGAAGCAGTATGCATTCAAAGTTACTTTGACAGATGAAGTATCTATGGCTATGTCCATGGTTTCCAATCATGAAAATCAATTCAGACTTGTCATGGTTAAACTCAACATGCCTGGCCTACATGACCTTGCGTTTGTGGATTTATTGCATGAGAAGGACATTCCAGTTGTTTTCATCTCATCTGGAGGGTCTGAGGATACTATTTGGAAAACATTAGCTAAAGGACCTTGTTATTTCCTTGAGGAACCAATCCTTTTTGAGGATCTCCAATACTTGTGGCTAATTGCACATCAGTCAAAACCTAAGTCAGCAATAGAAGCACAACATGCAAACAAGGCTTGTAGAGAAAAGGAAGAAAGGAAGATTGATAATGATGGTAATGAAAGCAAGCAAGGAGAGAAGAGAGAAGAACTTAGGCCAGCCATGATGAACTTTAACCGTGATAACCATATACCTAAGGAGACTGAGAAAAGAAGAGAACACAAAATTGGATTTGCGAAGAAAAGGAAAATCCTTTGGACTCTTGAGCTGCGTCAAAAGTTCACAGAAGCCCTAGAATATCTAGGCGGCATTGAGAGTAATATTGCTCGTCCAAAAGCGATTCAAAAATTAATGAAAGTGTCTGACCTAACATTAAACCAGATTTCAAGTTATATGCAGAGATACAAACTTCAGCTAAAGCGTAATAAGGTCACTATCGGTTATGGTTCATATCAAGCGGGTACATCATCAAACATTAGTGGCAAGACTACGTTTCCCTCCTCGTTAGGGAGTTCAAGTTACCGAGTAGAACAACAAGAGCATATGCATGAGTCTATAAACCATCCAACAACTGAATTTGCTGCAGGTATCCCTACATCATTTGCTCCCTTAAATGCGAGCCCAAAACAAGACCTGAACTCTGGTGAAACTCAAGAATCAGATATTCACAAACTGCAGAGTGTCCTAAGCAATTCATTTGTTGCAAATGAATTGGCCAGCCAAATTGATGGTGCTATAGTGGGAAACTCTATTCCAAATGCTTCTTCAACACTTCAAAACCTACCTGAAAATGAATATGAAGAGTTCTTCAGAAGTCTTGAAGATATTGAAACTGATAATTTTGGACTCATGATGTAA 1230 0.3854 MDDQSISMVNCPPSFATELNILLLNNNTLSLVYLSSLLKQYAFKVTLTDEVSMAMSMVSNHENQFRLVMVKLNMPGLHDLAFVDLLHEKDIPVVFISSGGSEDTIWKTLAKGPCYFLEEPILFEDLQYLWLIAHQSKPKSAIEAQHANKACREKEERKIDNDGNESKQGEKREELRPAMMNFNRDNHIPKETEKRREHKIGFAKKRKILWTLELRQKFTEALEYLGGIESNIARPKAIQKLMKVSDLTLNQISSYMQRYKLQLKRNKVTIGYGSYQAGTSSNISGKTTFPSSLGSSSYRVEQQEHMHESINHPTTEFAAGIPTSFAPLNASPKQDLNSGETQESDIHKLQSVLSNSFVANELASQIDGAIVGNSIPNASSTLQNLPENEYEEFFRSLEDIETDNFGLMM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02421 409 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 9 355 - -
Gma08g02421 409 Gene3D - 202 266 - -
Gma08g02421 409 MobiDBLite consensus disorder prediction 148 174 - -
Gma08g02421 409 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Gma08g02421 409 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 261 IPR006447 GO:0003677
Gma08g02421 409 CDD REC_typeB_ARR-like 39 134 - -
Gma08g02421 409 SUPERFAMILY CheY-like 18 135 IPR011006 -
Gma08g02421 409 Gene3D - 18 156 - -
Gma08g02421 409 SUPERFAMILY Homeodomain-like 203 265 IPR009057 -
Gma08g02421 409 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 355 IPR045279 GO:0009736
Gma08g02421 409 SMART REC_2 19 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02421 Gma-Chr8 24156773 24161473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02421 15 265 Response Regulator Gene Family AT2G25180 26.415 5.93e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma08g02421 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g02421 - - gmx:102668176 673.7