Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02407 ATGGCAGCAGCGTTCCAAGAAGGTAGCGGCGGTGGCCGCGGCGGCCGCGGCGGCGACGAAGACGCGACCATCGACGTGCACACCACGCGCGGCACTCCCATCCGCTACCTCCCCCTCGACCACCTCTACTCCGCCACCTCACCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCGAAGAAAATCAAAGCTCGCAAACTCACCCTAACGCataataataataataataataataataataatCATTACAACAACCACGAACACAAGAAAACGACCTCGTCTTCTTCTTCGTCCCTGGCCCTTCCTCCCAAGCCCCCTCTCCTCTTCGTCTACTCGCGCCGGCGCAAGAGGCATTCCCCTGCCGCTGCGACGACGGAGAACGACGAGAGCGAGAAGAGGTTGCTCAAGAAGAGGAAAATTGGGAGCACCGAGTTGGAGAGGTTGGGTGTGGATTTGAATACTGCGATTGGGGATGTTGACGGGCCCAGATTGAGGGAATGTAGAAATCAATTTGGGAATTCTGGTGCTGCTGGGAATGCTAAGTATGGTTCCTTGGAGAATTTGCCCAAAGTGTTGCCCGAATCTCGCAATGTGAAGAAATGGGTCGGGTTGAGTTTTGATAATGCTGATCCCGAGGCATTTGTTGGATTGCGATGCAAGGTTTACTGGCCCATGGATTTAAAAGCATACATTGGCTACGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTACGACGATGGTGATGAGGAAAATTTAATTATTGCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGCTGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATAATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTCGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGCTCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCTAAAAGATATTTAAGTGAACAGAAGCTTCCATTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGGCTGTAACAACGTAAGTGGAGAGGATGGAGGATGCTCAGATTCAGGTGATGATTGTTTAAATGGCAAGGGGACTTTGATGGCTCTGGAAACCGTTGAAAATTTTCCATATGAAGTTGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTAAAGATTCTGCTTTCAGGGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACAGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAACTTCGTCCTCTGTTTAGAGTGACAGTTGAAGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTCCTGGAATGAGGTATACGAAAAGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGAAGGTGGGGAAGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTACTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAAGAACTCAATTTGCAAGTTAGGTTCCAGAAGATGTAATAATAACTTGCCTCTTGGTTATAGGCAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGGGAACTGGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCCCCTCCTCCACCTTGCTGCTTATGTCCACTGATAGGTATGCTGAAATCTTTTAATATTTATGCTGTGTTAAAGTTAGAATTATATGTCTTTGGGTATTTAATGGAGTTTCTTCTAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAGGTTGTTATGCAGCATATGTGGTGTGTCTTATGGTGCCTGTATCCAATGTTCAAATAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTGTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAACATTCTGTTGCTGATGATCGTATAGTCCGAGTTTCTGGTCTATGTTCAGACTATGAACCACCGCCTAATCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGTTCATTAAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCGGATTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACGTACATGAGGGAAACCTTTCGGAAACGGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGGGAACTTGTTAGACCACCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATCGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGCGTTAATGGCGATGAACATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTCCTTGTTACTGTGGCTTCCCAAAGTGCCGAGAGGAGAATGAGATTTTTGACTGTACAGTTGTAATTACATCAAACCTTCATAAAAATGAAAAGAACCTGAGAATTCGAATGGAAGTACTTGCTGATTGTGTCATTGCCTCCGGAGTTTGGATTTTTTAA 3405 0.4347 MAAAFQEGSGGGRGGRGGDEDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKIKARKLTLTHNNNNNNNNNNHYNNHEHKKTTSSSSSSLALPPKPPLLFVYSRRRKRHSPAAATTENDESEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAAGNAKYGSLENLPKVLPESRNVKKWVGLSFDNADPEAFVGLRCKVYWPMDLKAYIGYVRSYDKETKIHHVKYDDGDEENLIIANENIRFHVSRDELKHLKLNFAKVRDNNVSDYNVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGSSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADGCNNVSGEDGGCSDSGDDCLNGKGTLMALETVENFPYEVGDLQILSLGKIVKDSAFRDGRFIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKLRPLFRVTVEGGEQFNGYTPSASWNEVYEKIKKMEKDASEGTVAEGGEEKGYESGSDMFGFSNPKVLKLIQGLSKSKISSKNSICKLGSRRCNNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGMLKSFNIYAVLKLELYVFGYLMEFLLGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWRLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVSGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSRIDTSNSILSISEKYTYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCREENEIFDCTVVITSNLHKNEKNLRIRMEVLADCVIASGVWIF 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02407 1134 Gene3D - 214 267 - -
Gma08g02407 1134 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 19 689 - -
Gma08g02407 1134 MobiDBLite consensus disorder prediction 72 105 - -
Gma08g02407 1134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 677 IPR013083 -
Gma08g02407 1134 SMART fyrn_3 467 511 IPR003888 GO:0005634
Gma08g02407 1134 Pfam F/Y-rich N-terminus 459 508 IPR003888 GO:0005634
Gma08g02407 1134 CDD PHD_ATX1_2_like 627 673 IPR042010 -
Gma08g02407 1134 CDD ePHD_ATX1_2_like 716 829 IPR041956 -
Gma08g02407 1134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 832 IPR013083 -
Gma08g02407 1134 SMART set_7 956 1080 IPR001214 GO:0005515
Gma08g02407 1134 SUPERFAMILY Tudor/PWWP/MBT 306 406 - -
Gma08g02407 1134 Pfam PWWP domain 313 400 IPR000313 -
Gma08g02407 1134 Pfam SET domain 967 1073 IPR001214 GO:0005515
Gma08g02407 1134 Pfam F/Y rich C-terminus 517 590 IPR003889 GO:0005634
Gma08g02407 1134 ProSiteProfiles FYR domain FYRN motif profile. 453 511 IPR003888 GO:0005634
Gma08g02407 1134 ProSiteProfiles Extended PHD (ePHD) domain profile. 679 830 IPR034732 -
Gma08g02407 1134 ProSiteProfiles SET domain profile. 956 1074 IPR001214 GO:0005515
Gma08g02407 1134 SUPERFAMILY SET domain 953 1092 IPR046341 -
Gma08g02407 1134 ProSiteProfiles Zinc finger PHD-type profile. 625 676 IPR019787 -
Gma08g02407 1134 ProSiteProfiles FYR domain FYRC motif profile. 515 601 IPR003889 GO:0005634
Gma08g02407 1134 PANTHER PHD FINGER PROTEINS 19 689 - -
Gma08g02407 1134 PANTHER PHD FINGER PROTEINS 714 1093 - -
Gma08g02407 1134 SMART fyrc_3 519 608 IPR003889 GO:0005634
Gma08g02407 1134 MobiDBLite consensus disorder prediction 1 24 - -
Gma08g02407 1134 SMART PWWP_4 310 373 IPR000313 -
Gma08g02407 1134 ProSiteProfiles PWWP domain profile. 312 375 IPR000313 -
Gma08g02407 1134 CDD SET_SETD1-like 944 1092 - -
Gma08g02407 1134 SUPERFAMILY FYVE/PHD zinc finger 619 686 IPR011011 -
Gma08g02407 1134 Gene3D - 454 593 - -
Gma08g02407 1134 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 714 1093 - -
Gma08g02407 1134 Pfam PHD-finger 640 674 - -
Gma08g02407 1134 Pfam PHD-zinc-finger like domain 715 829 - -
Gma08g02407 1134 SMART PHD_3 627 674 IPR001965 -
Gma08g02407 1134 SMART PHD_3 764 830 IPR001965 -
Gma08g02407 1134 Gene3D SET domain 903 1097 IPR046341 -
Gma08g02407 1134 ProSiteProfiles Post-SET domain profile. 1080 1092 IPR003616 -
Gma08g02407 1134 ProSitePatterns Zinc finger PHD-type signature. 628 673 IPR019786 -
Gma08g02407 1134 Gene3D - 300 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02407 Gma-Chr8 23835581 23852509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02407 628 800 C2H2 Transcription Factor Family AT3G14740 32.571 1.13e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma08g02407 zf-HC5HC2H_2 7.1e-30 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02553 18 59650373 59663403 Gma08g02407 08 23835581 23852509 GST