Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g02393 ATGCAATATGGCAAGCTTCCACTATCTTCACAAGCATCAGAGGAGAAAGAGGGGACAGTAGAAGACTTTGATGCTTATAATAATTATGCATCTTGGTCTTCAGAAACTGACATGTCTGAAATGGTTTCTGCTCTTTCTCAAGTTATGGGAACTACCAATCGGAACCCACACATGCCACAATCAAACTCCTTTCCTTCCTCAACTTCCGTGGTCAAAGATCAACCTCAACCATACCCATCTCAACCTCCTCCAGATCAAGAGGTGACAAAGAAGCCACACTACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCAGCAGAAATCCGTGACCCAAAAAAAGCAGCAAGAGTGTGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGACTTCATCAAAATGTTCCCTATATGCAACAACACCAACAAGGTTCCTCAAACAGAAACGTTTTTCCCTTCCATGCTACTTCCTCCACTTCTTCTAGTGCAACTGGGTCTGTTTCTTCTCTTGATGCTGTTGCCCCTCCTTCATTGTCCACACATGACCACCAAGTTTTCCCAAATCTGTATCAATATGCACAGATTCTTTCAAGTGGTGATGAAGAGTTCCCTTATTACACATCCCATCTTTTCAACCAACAACAACAACACCAACCTTTCAGTTCTCAATTCTCTACCACTTTTTCTTCCTCCTCATCTCCCTCATCCTACTTTTACAATCAGCAACAACAATATGATCAACAAGGACATGATCACTCAAACCACTAG 834 0.4329 MQYGKLPLSSQASEEKEGTVEDFDAYNNYASWSSETDMSEMVSALSQVMGTTNRNPHMPQSNSFPSSTSVVKDQPQPYPSQPPPDQEVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERLHQNVPYMQQHQQGSSNRNVFPFHATSSTSSSATGSVSSLDAVAPPSLSTHDHQVFPNLYQYAQILSSGDEEFPYYTSHLFNQQQQHQPFSSQFSTTFSSSSSPSSYFYNQQQQYDQQGHDHSNH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g02393 277 Gene3D AP2/ERF domain 93 152 IPR036955 GO:0003700|GO:0006355
Gma08g02393 277 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 PANTHER DNA-BINDING DOMAIN 4 266 IPR044808 GO:0003700|GO:0009873
Gma08g02393 277 MobiDBLite consensus disorder prediction 163 191 - -
Gma08g02393 277 MobiDBLite consensus disorder prediction 43 96 - -
Gma08g02393 277 MobiDBLite consensus disorder prediction 1 23 - -
Gma08g02393 277 PANTHER - 4 266 - -
Gma08g02393 277 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Gma08g02393 277 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Gma08g02393 277 MobiDBLite consensus disorder prediction 43 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g02393 Gma-Chr8 23649421 23651961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g02393 3 153 AP2-EREBP Transcription Factor Family AT5G61890 55.346 9.46e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma08g02393 AP2 7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g02393 08 23649421 23651961 Gma08g02393 08 23649421 23651961 ECH
Gma08g02393 08 23649421 23651961 Gma06g01456 06 13872923 13875526 ECH
Gma08g02393 08 23649421 23651961 Gma04g01951 04 49974276 49976502 ECH
Gma18g02542 18 59506961 59511058 Gma08g02393 08 23649421 23651961 GST